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Lj4g3v0338090.1

Overview

Field Value
Gene ID Lj4g3v0338090
Transcript ID Lj4g3v0338090.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Glycine max] gi|356558612|ref|XP_003547598.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 8 8
SignalP 1 31 31
Phobius 1 24 24
SignalP 1 24 24
Phobius 9 19 11
PANTHER 12 576 565 0
PANTHER 12 576 565 0
Phobius 20 24 5
Phobius 25 576 552
SUPERFAMILY 45 399 355 7.48E-91
Gene3D 45 371 327 1.10E-106
Pfam 112 354 243 6.20E-39
PRINTS 116 135 20 8.60E-07
PRINTS 206 222 17 8.60E-07
PRINTS 280 298 19 8.60E-07
Gene3D 386 576 191 5.70E-46
SUPERFAMILY 400 576 177 5.62E-32
Pfam 400 576 177 2.10E-39

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj4g3v0338090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0338090.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.