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Lj4g3v0450650.1

Overview

Field Value
Gene ID Lj4g3v0450650
Transcript ID Lj4g3v0450650.1
Lotus japonicus genome version MG20 v3.0
Description F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357503977|ref|XP_003622277.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 243 243 – –
ProSiteProfiles
PS50181
10 46 37 13.233
IPR001810
SUPERFAMILY
SSF81383
11 53 43 4.19E-14
IPR001810
Gene3D
G3DSA:3.80.10.10
11 53 43 2.30E-16
IPR032675
PANTHER
PTHR32212
12 289 278 1.50E-36 –
PANTHER
PTHR32212:SF126
12 289 278 1.50E-36 –
Pfam
PF00646
13 46 34 3.40E-12
IPR001810
SMART
SM00256
16 56 41 8.70E-07
IPR001810
Gene3D
G3DSA:3.80.10.10
111 260 150 2.30E-16
IPR032675
Pfam
PF08387
216 257 42 6.00E-10
IPR006566
SMART
SM00579
218 290 73 5.60E-04
IPR006566
Phobius
TRANSMEMBRANE
244 263 20 – –
Phobius
CYTOPLASMIC_DOMAIN
264 294 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v0450650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0450650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.