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Lj4g3v0619950.1

Overview

Field Value
Gene ID Lj4g3v0619950
Transcript ID Lj4g3v0619950.1
Lotus japonicus genome version MG20 v3.0
Description 3-methylcrotonyl-CoA carboxylase [Medicago truncatula] gi|357475341|ref|XP_003607956.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22855
34 556 523 0 –
PANTHER
PTHR22855:SF13
34 556 523 0 –
SUPERFAMILY
SSF52096
38 279 242 9.96E-69
IPR029045
ProSiteProfiles
PS50980
43 257 215 34.485
IPR011762
Gene3D
G3DSA:3.90.226.10
43 281 239 6.80E-79
IPR029045
Pfam
PF01039
63 547 485 7.20E-159
IPR000022
ProSiteProfiles
PS50989
258 550 293 56.158
IPR011763
SUPERFAMILY
SSF52096
298 556 259 1.29E-82
IPR029045
Gene3D
G3DSA:3.90.226.10
300 551 252 3.10E-90
IPR029045

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016874
Molecular function Ligase activity Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj4g3v0619950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0619950.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.