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Lj4g3v0708640.1

Overview

Field Value
Gene ID Lj4g3v0708640
Transcript ID Lj4g3v0708640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Glycine max] gi|356514362|ref|XP_003525875.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32467:SF26
14 636 623 0 –
PANTHER
PTHR32467
14 636 623 0
IPR031112
SUPERFAMILY
SSF54171
299 368 70 3.66E-16
IPR016177
Pfam
PF00847
299 358 60 2.60E-11
IPR001471
CDD
cd00018
299 367 69 1.49E-21
IPR001471
Gene3D
G3DSA:3.30.730.10
300 367 68 5.70E-15
IPR001471
ProSiteProfiles
PS51032
300 366 67 18.821
IPR001471
SMART
SM00380
300 372 73 2.40E-27
IPR001471
PRINTS
PR00367
301 312 12 2.30E-06
IPR001471
SUPERFAMILY
SSF54171
401 461 61 1.44E-17
IPR016177
CDD
cd00018
401 462 62 5.39E-25
IPR001471
ProSiteProfiles
PS51032
402 460 59 19.19
IPR001471
SMART
SM00380
402 466 65 2.40E-33
IPR001471
Gene3D
G3DSA:3.30.730.10
402 460 59 1.30E-18
IPR001471
Pfam
PF00847
403 452 50 1.60E-09
IPR001471
PRINTS
PR00367
442 462 21 2.30E-06
IPR001471
MobiDBLite
mobidb-lite
559 590 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj4g3v0708640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0708640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.