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Lj4g3v0938830.1

Overview

Field Value
Gene ID Lj4g3v0938830
Transcript ID Lj4g3v0938830.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein-like [Glycine max] gi|356559408|ref|XP_003547991.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11375
6 177 172 1.90E-96 –
SUPERFAMILY
SSF52058
48 165 118 1.48E-20
IPR032675
Gene3D
G3DSA:3.80.10.10
48 171 124 4.70E-22
IPR032675
ProSiteProfiles
PS51450
57 78 22 5.748
IPR001611
Pfam
PF14580
64 173 110 5.20E-13 –
ProSiteProfiles
PS51450
79 98 20 6.811
IPR001611
ProSiteProfiles
PS51450
104 125 22 9.722
IPR001611
MobiDBLite
mobidb-lite
163 389 227 – –
PANTHER
PTHR11375
260 411 152 1.90E-96 –
MobiDBLite
mobidb-lite
397 416 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj4g3v0938830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0938830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.