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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF14580
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.013s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0207049.1
n.a. Leucine-rich repeat-containing protein [Medicago truncatula] gi|357489671|ref|XP_003615123.1| chr0 103324473 103327843 +
1 domain prediction
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Lj0g3v0268989.1
n.a. PREDICTED: U2 small nuclear ribonucleoprotein A'-like isoform X1 [Cicer arietinum] gi|502090322|ref|XP_004489191.1| chr0 139364330 139368682 -
1 domain prediction
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Lj0g3v0288609.1
n.a. PREDICTED: U2 small nuclear ribonucleoprotein A'-like isoform X1 [Cicer arietinum] gi|502090322|ref|XP_004489191.1| chr0 149932992 149936282 -
1 domain prediction
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Lj4g3v0938830.1
n.a. PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein-like [Glycine max] gi|356559408|ref|XP_003547991.1| chr4 13860515 13863656 +
1 domain prediction
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Lj4g3v0938840.1
n.a. n.a. chr4 13860741 13864676 -
1 domain prediction
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Lj6g3v1690560.1
n.a. PREDICTED: tubulin-specific chaperone E-like [Cicer arietinum] gi|502122376|ref|XP_004497715.1| chr6 18734389 18741067 +
1 domain prediction
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LotjaGi1g1v0144200.1
n.a. Leucine-rich repeat-containing protein; TAIR: AT1G78230.1 Outer arm dynein light chain 1 protein; Swiss-Prot: sp|Q54Q39|PP1R7_DICDI Protein phosphatase 1 regulatory subunit pprA; TrEMBL-Plants: tr|A0A0B2Q064|A0A0B2Q064_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0144200 LjG1.1_chr1 23989849 23993516 -
1 domain prediction
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LotjaGi3g1v0094900.1
n.a. U2 small nuclear ribonucleoprotein A; TAIR: AT1G09760.1 U2 small nuclear ribonucleoprotein A; Swiss-Prot: sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A'; TrEMBL-Plants: tr|I3SUJ1|I3SUJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0094900 LjG1.1_chr3 11763164 11768089 +
1 domain prediction
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LotjaGi4g1v0116100.1
n.a. Acidic leucine-rich nuclear phosphoprotein 32-related protein; TAIR: AT3G50690.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9SCQ7|AN32_ARATH Acidic leucine-rich nuclear phosphoprotein 32-related protein; TrEMBL-Plants: tr|V7CGI0|V7CGI0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0116100 LjG1.1_chr4 16825885 16830139 +
1 domain prediction
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LotjaGi5g1v0366500.1
n.a. U2 small nuclear ribonucleoprotein A; TAIR: AT1G09760.1 U2 small nuclear ribonucleoprotein A; Swiss-Prot: sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A'; TrEMBL-Plants: tr|I3SUJ1|I3SUJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0366500 LjG1.1_chr5 68128246 68135781 +
1 domain prediction
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