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Lj4g3v0938840.1

Overview

Field	Value
Gene ID	Lj4g3v0938840
Transcript ID	Lj4g3v0938840.1
Lotus japonicus genome version	MG20 v3.0
Description
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11375 View details on PTHR11375 Search for proteins/transripts with this domain View external data on PTHR11375	6	170	165	4.90E-80	–
Gene3D	G3DSA:3.80.10.10 View details on G3DSA:3.80.10.10 Search for proteins/transripts with this domain View external data on G3DSA:3.80.10.10	48	169	122	1.10E-22	IPR032675 Show description in modal box View details on IPR032675 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52058 View details on SSF52058 Search for proteins/transripts with this domain View external data on SSF52058	48	166	119	1.87E-21	IPR032675 Show description in modal box View details on IPR032675 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51450 View details on PS51450 Search for proteins/transripts with this domain View external data on PS51450	57	78	22	5.748	IPR001611 Show description in modal box View details on IPR001611 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF14580 View details on PF14580 Search for proteins/transripts with this domain View external data on PF14580	63	161	99	2.90E-13	–
ProSiteProfiles	PS51450 View details on PS51450 Search for proteins/transripts with this domain View external data on PS51450	79	98	20	6.811	IPR001611 Show description in modal box View details on IPR001611 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51450 View details on PS51450 Search for proteins/transripts with this domain View external data on PS51450	104	125	22	9.722	IPR001611 Show description in modal box View details on IPR001611 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj4g3v0938840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0938840.1, powered by CORGI.

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