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Lj4g3v1061080.2

Overview

Field Value
Gene ID Lj4g3v1061080
Transcript ID Lj4g3v1061080.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b-like [Cicer arietinum] gi|502153519|ref|XP_004509368.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51686
1 388 388 28.212
IPR001678
PANTHER
PTHR22807:SF16
8 177 170 4.60E-166 –
PANTHER
PTHR22807
8 177 170 4.60E-166 –
PRINTS
PR02010
9 27 19 1.90E-27
IPR023269
SUPERFAMILY
SSF53335
30 174 145 2.03E-42
IPR029063
PRINTS
PR02008
81 95 15 8.70E-11
IPR023267
Gene3D
G3DSA:3.40.50.150
91 169 79 3.00E-52
IPR029063
Pfam
PF01189
98 169 72 2.80E-09
IPR001678
CDD
cd02440
109 173 65 4.84E-04 –
PRINTS
PR02008
124 134 11 8.70E-11
IPR023267
PRINTS
PR02010
135 152 18 1.90E-27
IPR023269
Gene3D
G3DSA:3.40.50.150
247 387 141 3.00E-52
IPR029063
Pfam
PF01189
250 385 136 6.90E-17
IPR001678
PANTHER
PTHR22807:SF16
254 388 135 4.60E-166 –
PANTHER
PTHR22807
254 388 135 4.60E-166 –
SUPERFAMILY
SSF53335
256 388 133 2.03E-42
IPR029063
PRINTS
PR02008
258 270 13 8.70E-11
IPR023267
PRINTS
PR02010
278 297 20 1.90E-27
IPR023269
PRINTS
PR02008
317 333 17 8.70E-11
IPR023267
PRINTS
PR02008
370 387 18 8.70E-11
IPR023267

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj4g3v1061080.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1061080.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.