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Lj4g3v1719740.2

Overview

Field	Value
Gene ID	Lj4g3v1719740
Transcript ID	Lj4g3v1719740.2
Related isoforms 1	Lj4g3v1719740.1
Lotus japonicus genome version	MG20 v3.0
Description	Uncharacterized protein TCM_014264 [Theobroma cacao] gi\|508774818\|gb\|EOY22074.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	257	257	–	–
PANTHER	PTHR33476:SF7 View details on PTHR33476:SF7 Search for proteins/transripts with this domain View external data on PTHR33476:SF7	42	110	69	1.30E-145	–
PANTHER	PTHR33476 View details on PTHR33476 Search for proteins/transripts with this domain View external data on PTHR33476	42	110	69	1.30E-145	–
PANTHER	PTHR33476:SF7 View details on PTHR33476:SF7 Search for proteins/transripts with this domain View external data on PTHR33476:SF7	126	491	366	1.30E-145	–
PANTHER	PTHR33476 View details on PTHR33476 Search for proteins/transripts with this domain View external data on PTHR33476	126	491	366	1.30E-145	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	258	276	19	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	277	308	32	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	277	497	221	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	369	389	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	455	482	28	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v1719740.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1719740.2, powered by CORGI.

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