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Lj4g3v1909900.1

Overview

Field Value
Gene ID Lj4g3v1909900
Transcript ID Lj4g3v1909900.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: extended synaptotagmin-1-like isoform 2 [Glycine max] gi|356562955|ref|XP_003549733.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 34 34 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 18 18 – –
ProSiteProfiles
PS51153
13 166 154 16.09
IPR008808
Phobius
SIGNAL_PEPTIDE_H_REGION
19 29 11 – –
Pfam
PF05659
19 145 127 1.00E-32
IPR008808
Phobius
SIGNAL_PEPTIDE_C_REGION
30 34 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
35 503 469 – –
PANTHER
PTHR10774:SF91
197 370 174 1.20E-62 –
PANTHER
PTHR10774
197 370 174 1.20E-62 –
ProSiteProfiles
PS50004
216 318 103 18.034
IPR000008
Gene3D
G3DSA:2.60.40.150
220 337 118 5.80E-32
IPR000008
SUPERFAMILY
SSF49562
227 338 112 8.48E-32
IPR000008
Pfam
PF00168
229 336 108 5.70E-26
IPR000008
SMART
SM00239
230 333 104 7.70E-24
IPR000008
CDD
cd00030
231 336 106 2.00E-29 –
PRINTS
PR00360
246 258 13 1.40E-05
IPR000008
PRINTS
PR00360
276 289 14 1.40E-05
IPR000008
PRINTS
PR00360
298 306 9 1.40E-05
IPR000008
SUPERFAMILY
SSF49562
354 489 136 1.34E-23
IPR000008
Gene3D
G3DSA:2.60.40.150
355 489 135 4.00E-26
IPR000008
ProSiteProfiles
PS50004
370 469 100 13.416
IPR000008
Pfam
PF00168
383 486 104 1.80E-20
IPR000008
SMART
SM00239
384 484 101 5.90E-19
IPR000008
CDD
cd00030
385 487 103 5.86E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj4g3v1909900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1909900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.