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Lj4g3v1983480.1

Overview

Field	Value
Gene ID	Lj4g3v1983480
Transcript ID	Lj4g3v1983480.1
Lotus japonicus genome version	MG20 v3.0
Description
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	26	216	191	1.75E-40	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11017 View details on PTHR11017 Search for proteins/transripts with this domain View external data on PTHR11017	35	272	238	1.20E-87	–
PANTHER	PTHR11017:SF163 View details on PTHR11017:SF163 Search for proteins/transripts with this domain View external data on PTHR11017:SF163	35	272	238	1.20E-87	–
PRINTS	PR00364 View details on PR00364 Search for proteins/transripts with this domain View external data on PR00364	64	78	15	9.10E-08	–
Pfam	PF00931 View details on PF00931 Search for proteins/transripts with this domain View external data on PF00931	66	221	156	4.90E-21	IPR002182 Show description in modal box View details on IPR002182 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00364 View details on PR00364 Search for proteins/transripts with this domain View external data on PR00364	157	171	15	9.10E-08	–
SUPERFAMILY	SSF46785 View details on SSF46785 Search for proteins/transripts with this domain View external data on SSF46785	193	272	80	3.26E-10	IPR011991 Show description in modal box View details on IPR011991 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0043531 View details of GO:0043531 AmiGO InterPro QuickGO	Molecular function	ADP binding	Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.	Subterm of View details of GO:0032559 View details of GO:0043168

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj4g3v1983480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1983480.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.