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Lj4g3v1986770.1

Overview

Field Value
Gene ID Lj4g3v1986770
Transcript ID Lj4g3v1986770.1
Lotus japonicus genome version MG20 v3.0
Description F-box protein SKIP1 [Medicago truncatula] gi|357480017|ref|XP_003610294.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006
1 271 271 6.60E-37 –
SUPERFAMILY
SSF81383
7 98 92 2.88E-08
IPR001810
Gene3D
G3DSA:3.80.10.10
10 270 261 2.40E-39
IPR032675
Pfam
PF00646
13 55 43 2.20E-04
IPR001810
SUPERFAMILY
SSF52047
83 269 187 4.51E-21 –
SMART
SM00367
116 141 26 4.40E-04
IPR006553
SMART
SM00367
142 167 26 8.00E-04
IPR006553
SMART
SM00367
239 264 26 0.23
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj4g3v1986770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1986770.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.