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Lj4g3v2215330.2

Overview

Field	Value
Gene ID	Lj4g3v2215330
Transcript ID	Lj4g3v2215330.2
Related isoforms 2	Lj4g3v2215330.1 Lj4g3v2215330.3
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 3-like [Glycine max] gi\|356565620\|ref\|XP_003551037.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13302 View details on PTHR13302 Search for proteins/transripts with this domain View external data on PTHR13302	1	783	783	0	IPR007265 Show description in modal box View details on IPR007265 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04136 View details on PF04136 Search for proteins/transripts with this domain View external data on PF04136	116	262	147	1.10E-46	IPR007265 Show description in modal box View details on IPR007265 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF74788 View details on SSF74788 Search for proteins/transripts with this domain View external data on SSF74788	183	458	276	2.67E-06	IPR016159 Show description in modal box View details on IPR016159 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	626	646	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	772	783	12	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005801 View details of GO:0005801 AmiGO InterPro QuickGO	Cellular component	Cis-Golgi network	The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.	Subterm of View details of GO:0043231 View details of GO:0044431
GO:0006886 View details of GO:0006886 AmiGO InterPro QuickGO	Biological process	Intracellular protein transport	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.	Subterm of View details of GO:0015031 View details of GO:0046907 Part of View details of GO:0034613
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575

Genome browser

LORE1 insertions 1

30060430

Expression data

Expression pattern

Expression pattern of Lj4g3v2215330.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2215330.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.