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Lj4g3v2238990.1

Overview

Field Value
Gene ID Lj4g3v2238990
Transcript ID Lj4g3v2238990.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max] gi|356564676|ref|XP_003550576.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap
MF_00171
1 243 243 27.337
IPR001406
PIRSF
PIRSF001430
4 252 249 2.20E-72
IPR001406
Gene3D
G3DSA:3.30.70.580
6 99 94 2.60E-26
IPR020094
PANTHER
PTHR11142:SF0
6 261 256 5.90E-110 –
TIGRFAM
TIGR00071
6 228 223 1.40E-54
IPR001406
PANTHER
PTHR11142
6 261 256 5.90E-110
IPR001406
CDD
cd02570
6 243 238 4.35E-100 –
SUPERFAMILY
SSF55120
6 249 244 1.31E-70
IPR020103
Pfam
PF01416
12 98 87 9.10E-07
IPR020097
Gene3D
G3DSA:3.30.70.660
101 245 145 5.90E-38
IPR020095
Pfam
PF01416
137 244 108 4.00E-26
IPR020097

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj4g3v2238990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2238990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.