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PTHR11142

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

Associated Lotus transcripts 20

Transcript Name Description Predicted domains Domain count
Lj0g3v0246539.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491363|ref|XP_003615969.1|
Domains
10
Lj0g3v0302959.1
– PREDICTED: tRNA pseudouridine synthase A-like isoform X2 [Cicer arietinum] gi|502076774|ref|XP_004485454.1|
Domains
9
Lj0g3v0302969.1
– PREDICTED: tRNA pseudouridine synthase A-like [Glycine max] gi|356543399|ref|XP_003540148.1|
Domains
10
Lj0g3v0343009.1
– TRNA pseudouridine synthase [Medicago truncatula] gi|357480149|ref|XP_003610360.1|
Domains
13
Lj2g3v2379070.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491363|ref|XP_003615969.1|
Domains
19
Lj2g3v2410320.1
– Pseudouridylate synthase [Medicago truncatula] gi|357491367|ref|XP_003615971.1|
Domains
10
Lj2g3v2410320.2
– Pseudouridylate synthase [Medicago truncatula] gi|357491367|ref|XP_003615971.1|
Domains
13
Lj4g3v2238990.1
– PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max] gi|356564676|ref|XP_003550576.1|
Domains
15
Lj4g3v3014900.1
– PREDICTED: tRNA pseudouridine synthase A-like [Glycine max] gi|356527708|ref|XP_003532450.1|
Domains
9
Lj5g3v1889480.1
– PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] gi|356574565|ref|XP_003555416.1|
Domains
10
Lj5g3v1889480.2
– PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] gi|356574565|ref|XP_003555416.1|
Domains
16
Lj5g3v1889480.3
– PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] gi|356574565|ref|XP_003555416.1|
Domains
10
LotjaGi1g1v0109500.1
– TRNA pseudouridine synthase A, related protein; TAIR: AT2G30320.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase; TrEMBL-Plants: tr|K7KAB0|K7KAB0_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi1g1v0109500
Domains
13
LotjaGi1g1v0110600.1
– TRNA pseudouridine synthase A; TAIR: AT2G30320.1 Pseudouridine synthase family protein; Swiss-Prot: sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase; TrEMBL-Plants: tr|K7KAA8|K7KAA8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0110600
Domains
19
LotjaGi4g1v0286200.1
– TRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
Domains
13
LotjaGi4g1v0286200.2
– TRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
Domains
13
LotjaGi4g1v0314200.1
– TRNA pseudouridine synthase A; TAIR: AT3G06950.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine synthase A 1; TrEMBL-Plants: tr|V7CC41|V7CC41_PHAVU tRNA pseudouridine synthase; Found in the gene: LotjaGi4g1v0314200
Domains
19
LotjaGi4g1v0439300.1
– TRNA pseudouridine synthase A; TAIR: AT5G35400.1 Pseudouridine synthase family protein; Swiss-Prot: sp|B0SC03|TRUA_LEPBA tRNA pseudouridine synthase A; TrEMBL-Plants: tr|I1KPQ1|I1KPQ1_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi4g1v0439300
Domains
10
LotjaGi5g1v0285000.1
– TRNA pseudouridine synthase; TAIR: AT1G34150.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3SX07|PUS3_BOVIN tRNA pseudouridine(38/39) synthase; TrEMBL-Plants: tr|K7N408|K7N408_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi5g1v0285000
Domains
16
LotjaGi6g1v0364100_LC.1
– TRNA pseudouridine synthase A; TAIR: AT1G09800.1 Pseudouridine synthase family protein; Swiss-Prot: sp|A7IKI9|TRUA_XANP2 tRNA pseudouridine synthase A; TrEMBL-Plants: tr|K7LVD0|K7LVD0_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi6g1v0364100_LC
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.00