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Lj4g3v2249040.1

Overview

Field Value
Gene ID Lj4g3v2249040
Transcript ID Lj4g3v2249040.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase-like [Glycine max] gi|356548029|ref|XP_003542406.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21262:SF12
1 444 444 2.40E-287 –
Pfam
PF13328
1 116 116 2.50E-14
IPR003607
PANTHER
PTHR21262
1 444 444 2.40E-287 –
SUPERFAMILY
SSF109604
1 131 131 8.47E-24 –
SUPERFAMILY
SSF81301
133 325 193 8.34E-39 –
Gene3D
G3DSA:3.30.460.10
135 285 151 2.90E-34 –
CDD
cd05399
157 292 136 2.15E-31
IPR007685
Pfam
PF04607
182 304 123 5.60E-29
IPR007685
SMART
SM00954
182 306 125 1.90E-39
IPR007685
SUPERFAMILY
SSF47473
339 406 68 1.04E-16
IPR011992
ProSiteProfiles
PS50222
341 376 36 15.685
IPR002048
Gene3D
G3DSA:1.10.238.10
343 408 66 2.30E-16
IPR011992
SMART
SM00054
345 373 29 7.50E-05
IPR002048
Pfam
PF13499
348 401 54 6.50E-10
IPR002048
CDD
cd00051
348 403 56 3.73E-12
IPR002048
ProSitePatterns
PS00018
354 366 13 –
IPR018247
ProSiteProfiles
PS50222
378 410 33 8.711
IPR002048
SMART
SM00054
379 407 29 0.84
IPR002048
ProSitePatterns
PS00018
388 400 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0015969
Biological process Guanosine tetraphosphate metabolic process The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj4g3v2249040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2249040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.