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Lj4g3v2265060.1

Overview

Field	Value
Gene ID	Lj4g3v2265060
Transcript ID	Lj4g3v2265060.1
Lotus japonicus genome version	MG20 v3.0
Description	PAS [Medicago truncatula] gi\|124359938\|gb\|ABN07954.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Coils	Coil View details on Coil Search for proteins/transripts with this domain	7	34	28	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	26	75	50	–	–
ProSiteProfiles	PS50112 View details on PS50112 Search for proteins/transripts with this domain View external data on PS50112	77	148	72	14.256	IPR000014 Show description in modal box View details on IPR000014 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00091 View details on SM00091 Search for proteins/transripts with this domain View external data on SM00091	79	145	67	2.70E-08	IPR000014 Show description in modal box View details on IPR000014 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.450.20 View details on G3DSA:3.30.450.20 Search for proteins/transripts with this domain View external data on G3DSA:3.30.450.20	80	189	110	3.80E-18	–
TIGRFAM	TIGR00229 View details on TIGR00229 Search for proteins/transripts with this domain View external data on TIGR00229	81	189	109	9.50E-13	IPR000014 Show description in modal box View details on IPR000014 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF55785 View details on SSF55785 Search for proteins/transripts with this domain View external data on SSF55785	83	186	104	1.47E-17	IPR000014 Show description in modal box View details on IPR000014 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13426 View details on PF13426 Search for proteins/transripts with this domain View external data on PF13426	92	189	98	9.00E-11	IPR000014 Show description in modal box View details on IPR000014 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00130 View details on cd00130 Search for proteins/transripts with this domain View external data on cd00130	92	189	98	1.90E-14	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	199	222	24	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	247	316	70	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj4g3v2265060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2265060.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.