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IPR000014 is a PAS domain.
<p>PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [[cite:PUB00015791]]. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in:</p> <ul> <li>Per- period circadian protein</li> <li>Arnt- Ah receptor nuclear translocator protein</li> <li>Sim- single-minded protein.</li> </ul> <p>PAS domains are often associated with PAC domains [interpro:IPR001610]. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs [[cite:PUB00014500]]. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand [[cite:PUB00014501]]. Probably the most surprising identification of a PAS domain was that in EAG-like K<sup></sup>-channels [[cite:PUB00005472]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: phytochrome type A-like [Glycine max] gi|356572880|ref|XP_003554593.1| | 38 | ||
| – | Phototropin [Vicia faba] gi|24899170|dbj|BAC23099.1| | 8 | ||
| – | Phototropin [Vicia faba] gi|24899170|dbj|BAC23099.1| | 14 | ||
| – | PREDICTED: phototropin-2-like [Glycine max] gi|356559155|ref|XP_003547866.1| | 15 | ||
| – | Tyrosine protein kinase [Medicago truncatula] gi|357478991|ref|XP_003609781.1| | 13 | ||
| – | PREDICTED: protein TWIN LOV 1-like isoform X1 [Cicer arietinum] gi|502093589|ref|XP_004489990.1| | 15 | ||
| – | PREDICTED: protein TWIN LOV 1-like isoform X1 [Cicer arietinum] gi|502093589|ref|XP_004489990.1| | 14 | ||
| – | Phototropin [Phaseolus vulgaris] gi|60099454|dbj|BAD89966.1| | 28 | ||
| – | Phototropin [Phaseolus vulgaris] gi|60099454|dbj|BAD89966.1| | 28 | ||
| – | Phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| | 44 | ||
| – | PAS [Medicago truncatula] gi|124359938|gb|ABN07954.1| | 10 | ||
| – | Phytochrome E, partial [Lotus japonicus] gi|477504399|dbj|BAN14709.1| | 26 | ||
| – | Circadian clock-associated FKF1 [Glycine max] gi|351727583|ref|NP_001235886.1| | 25 | ||
| – | Phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| | 40 | ||
| – | PREDICTED: phytochrome E-like [Glycine max] gi|356532946|ref|XP_003535030.1| | 40 | ||
| – | PREDICTED: adagio protein 1-like [Cicer arietinum] gi|502085564|ref|XP_004487946.1| | 13 | ||
| – | PREDICTED: adagio protein 1-like [Cicer arietinum] gi|502085564|ref|XP_004487946.1| | 21 | ||
| – | Twin lov 1 protein; TAIR: AT2G02710.2 PAS/LOV protein B; Swiss-Prot: sp|O64511|TLOV1_ARATH Protein TWIN LOV 1; TrEMBL-Plants: tr|A0A126X0H7|A0A126X0H7_GLYGL Putative LOV domain-containing protein; Found in the gene: LotjaGi2g1v0308800 | 17 | ||
| – | Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|Q5DW44|Q5DW44_PHAVU Phototropin; Found in the gene: LotjaGi2g1v0365900 | 30 | ||
| – | Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|Q5DW44|Q5DW44_PHAVU Phototropin; Found in the gene: LotjaGi2g1v0365900 | 30 | ||
| – | Kinase family protein; TAIR: AT4G23050.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|K7K556|K7K556_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432000 | 28 | ||
| – | Kinase family protein; TAIR: AT4G23050.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|K7K556|K7K556_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432000 | 28 | ||
| – | Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|A0A126X246|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600 | 29 | ||
| – | Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|A0A126X246|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600 | 29 | ||
| – | Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp|O48963|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr|A0A126X246|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600 | 29 | ||
| – | Protein kinase family protein; TAIR: AT5G58140.1 phototropin 2; Swiss-Prot: sp|P93025|PHOT2_ARATH Phototropin-2; TrEMBL-Plants: tr|K7MGJ3|K7MGJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0149200 | 29 | ||
| – | Kinase family protein; TAIR: AT3G06620.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|I1KMQ9|I1KMQ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0331600 | 26 | ||
| – | Flavin-binding kelch domain F box protein; TAIR: AT1G68050.1 flavin-binding, kelch repeat, f box 1; Swiss-Prot: sp|Q9C9W9|ADO3_ARATH Adagio protein 3; TrEMBL-Plants: tr|V7CQN8|V7CQN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0457700 | 26 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 | 44 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 | 33 | ||
| – | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 | 44 | ||
| – | Kelch repeat-containing protein 1; TAIR: AT5G57360.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q94BT6|ADO1_ARATH Adagio protein 1; TrEMBL-Plants: tr|A0A126WYA5|A0A126WYA5_ASTME Putative LOV domain-containing protein; Found in the gene: LotjaGi6g1v0240900 | 23 | ||
| – | Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 | 49 | ||
| – | Kinase family protein; TAIR: AT3G06620.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp|Q9FPR3|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr|G7IFW1|G7IFW1_MEDTR PAS domain tyrosine kinase family protein; Found in the gene: LotjaGi6g1v0259000 | 27 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 2.63 |