Domain Predictions — View

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PF13426

Source: Pfam

Description

PAS domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 21

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0085679.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phototropin [Vicia faba] gi\|24899170\|dbj\|BAC23099.1\|	Domains G3DSA:3.30.450.20 IPR000014 IPR000700 IPR001610 PF13426 PS50112 PS50113 PTHR24351 PTHR24351:SF29 SM00086 SSF55785 TIGR00229 cd00130 mobidb-lite	14
Lj0g3v0090469.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: phototropin-2-like [Glycine max] gi\|356559155\|ref\|XP_003547866.1\|	Domains G3DSA:3.30.450.20 IPR000014 IPR000700 IPR001610 PF13426 PS50112 PS50113 PTHR24351 PTHR24351:SF81 SM00086 SM00091 SSF55785 TIGR00229 cd00130 mobidb-lite	15
Lj2g3v1338990.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein TWIN LOV 1-like isoform X1 [Cicer arietinum] gi\|502093589\|ref\|XP_004489990.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.30.450.20 IPR000014 IPR001610 NON_CYTOPLASMIC_DOMAIN PF13426 PS50112 PTHR24351 SM00086 SSF55785 TIGR00229 TMhelix TRANSMEMBRANE cd00130	15
Lj2g3v1339000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein TWIN LOV 1-like isoform X1 [Cicer arietinum] gi\|502093589\|ref\|XP_004489990.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.450.20 IPR000014 IPR001610 NON_CYTOPLASMIC_DOMAIN PF13426 PS50112 PTHR24351 SM00086 SSF55785 TIGR00229 TMhelix TRANSMEMBRANE cd00130	14
Lj3g3v3117660.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phototropin [Phaseolus vulgaris] gi\|60099454\|dbj\|BAD89966.1\|	Domains G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR24351 PTHR24351:SF29 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	28
Lj3g3v3117660.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phototropin [Phaseolus vulgaris] gi\|60099454\|dbj\|BAD89966.1\|	Domains G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR24351 PTHR24351:SF29 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	28
Lj4g3v2265060.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PAS [Medicago truncatula] gi\|124359938\|gb\|ABN07954.1\|	Domains Coil G3DSA:3.30.450.20 IPR000014 PF13426 PS50112 SM00091 SSF55785 TIGR00229 cd00130 mobidb-lite	10
Lj4g3v3113210.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Circadian clock-associated FKF1 [Glycine max] gi\|351727583\|ref\|NP_001235886.1\|	Domains Coil G3DSA:1.20.1280.50 G3DSA:2.120.10.80 G3DSA:3.30.450.20 IPR000014 IPR001610 IPR001810 IPR011043 IPR011498 IPR015915 PF00646 PF07646 PF13415 PF13418 PF13426 PS50112 PTHR23244 PTHR23244:SF263 SM00086 SSF50965 SSF55785 SSF81383 TIGR00229 cd00130 mobidb-lite	25
Lj6g3v1368660.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: adagio protein 1-like [Cicer arietinum] gi\|502085564\|ref\|XP_004487946.1\|	Domains G3DSA:1.20.1280.50 G3DSA:3.30.450.20 IPR000014 IPR001810 PF12937 PF13426 PS50112 PTHR23244 PTHR23244:SF326 SSF55785 SSF81383 TIGR00229 cd00130	13
Lj6g3v1368660.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: adagio protein 1-like [Cicer arietinum] gi\|502085564\|ref\|XP_004487946.1\|	Domains G3DSA:1.20.1280.50 G3DSA:2.120.10.80 G3DSA:3.30.450.20 IPR000014 IPR001810 IPR011043 IPR011498 IPR015915 PF07646 PF12937 PF13415 PF13418 PF13426 PS50112 PTHR23244 PTHR23244:SF326 SSF50965 SSF55785 SSF81383 TIGR00229 cd00130	21
LotjaGi2g1v0308800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Twin lov 1 protein; TAIR: AT2G02710.2 PAS/LOV protein B; Swiss-Prot: sp\|O64511\|TLOV1_ARATH Protein TWIN LOV 1; TrEMBL-Plants: tr\|A0A126X0H7\|A0A126X0H7_GLYGL Putative LOV domain-containing protein; Found in the gene: LotjaGi2g1v0308800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.30.450.20 IPR000014 IPR001610 IPR035965 NON_CYTOPLASMIC_DOMAIN PF13426 PS50112 PTHR47429 PTHR47429:SF2 SM00086 SSF55785 TIGR00229 TMhelix TRANSMEMBRANE cd00130	17
LotjaGi2g1v0365900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp\|O48963\|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr\|Q5DW44\|Q5DW44_PHAVU Phototropin; Found in the gene: LotjaGi2g1v0365900	Domains Coil G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 IPR035965 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR45637 PTHR45637:SF36 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	30
LotjaGi2g1v0365900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp\|O48963\|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr\|Q5DW44\|Q5DW44_PHAVU Phototropin; Found in the gene: LotjaGi2g1v0365900	Domains Coil G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 IPR035965 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR45637 PTHR45637:SF36 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	30
LotjaGi2g1v0432000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT4G23050.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp\|Q9FPR3\|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr\|K7K556\|K7K556_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432000	Domains Coil G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000719 IPR001245 IPR008271 IPR011009 IPR017441 IPR035965 PF07714 PF13426 PR00109 PS00107 PS00108 PS50011 PS50112 PTHR23257 PTHR23257:SF794 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd13999 mobidb-lite	28
LotjaGi2g1v0432000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT4G23050.1 PAS domain-containing protein tyrosine kinase family protein; Swiss-Prot: sp\|Q9FPR3\|EDR1_ARATH Serine/threonine-protein kinase EDR1; TrEMBL-Plants: tr\|K7K556\|K7K556_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432000	Domains Coil G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000719 IPR001245 IPR008271 IPR011009 IPR017441 IPR035965 PF07714 PF13426 PR00109 PS00107 PS00108 PS50011 PS50112 PTHR23257 PTHR23257:SF794 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd13999 mobidb-lite	28
LotjaGi3g1v0276600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp\|O48963\|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr\|A0A126X246\|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600	Domains G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 IPR035965 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR45637 PTHR45637:SF20 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	29
LotjaGi3g1v0276600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp\|O48963\|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr\|A0A126X246\|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600	Domains G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 IPR035965 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR45637 PTHR45637:SF20 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	29
LotjaGi3g1v0276600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kinase family protein; TAIR: AT3G45780.1 phototropin 1; Swiss-Prot: sp\|O48963\|PHOT1_ARATH Phototropin-1; TrEMBL-Plants: tr\|A0A126X246\|A0A126X246_LUPAN Putative LOV domain-containing protein; Found in the gene: LotjaGi3g1v0276600	Domains G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 IPR035965 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR45637 PTHR45637:SF20 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	29
LotjaGi4g1v0149200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein kinase family protein; TAIR: AT5G58140.1 phototropin 2; Swiss-Prot: sp\|P93025\|PHOT2_ARATH Phototropin-2; TrEMBL-Plants: tr\|K7MGJ3\|K7MGJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0149200	Domains G3DSA:1.10.510.10 G3DSA:3.30.200.20 G3DSA:3.30.450.20 IPR000014 IPR000700 IPR000719 IPR001610 IPR008271 IPR011009 IPR017441 IPR035965 PF00069 PF13426 PS00107 PS00108 PS50011 PS50112 PS50113 PTHR45637 PTHR45637:SF20 SM00086 SM00091 SM00220 SSF55785 SSF56112 TIGR00229 cd00130 cd05574 mobidb-lite	29
LotjaGi4g1v0457700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flavin-binding kelch domain F box protein; TAIR: AT1G68050.1 flavin-binding, kelch repeat, f box 1; Swiss-Prot: sp\|Q9C9W9\|ADO3_ARATH Adagio protein 3; TrEMBL-Plants: tr\|V7CQN8\|V7CQN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0457700	Domains G3DSA:1.20.1280.50 G3DSA:2.120.10.80 G3DSA:3.30.450.20 IPR000014 IPR001610 IPR001810 IPR011043 IPR011498 IPR015915 IPR035965 IPR036047 PF00646 PF07646 PF13415 PF13418 PF13426 PS50112 PTHR46175 PTHR46175:SF2 SM00086 SSF50965 SSF55785 SSF81383 TIGR00229 cd00130 mobidb-lite	26
LotjaGi6g1v0240900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Kelch repeat-containing protein 1; TAIR: AT5G57360.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp\|Q94BT6\|ADO1_ARATH Adagio protein 1; TrEMBL-Plants: tr\|A0A126WYA5\|A0A126WYA5_ASTME Putative LOV domain-containing protein; Found in the gene: LotjaGi6g1v0240900	Domains G3DSA:1.20.1280.50 G3DSA:2.120.10.80 G3DSA:3.30.450.20 IPR000014 IPR001810 IPR011043 IPR011498 IPR015915 IPR035965 IPR036047 PF07646 PF12937 PF13415 PF13418 PF13426 PS50112 PTHR46175 PTHR46175:SF5 SSF50965 SSF55785 SSF81383 TIGR00229 cd00130	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00130	CDD	1	4.76