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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2528130 |
| Transcript ID | Lj4g3v2528130.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lipoxygenase 6, choloroplastic-like [Glycine max] gi|356525142|ref|XP_003531186.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 354 | 322 | 0 | – | |
| PANTHER | 33 | 354 | 322 | 0 | ||
| SMART | 69 | 207 | 139 | 4.60E-14 | ||
| SUPERFAMILY | 70 | 210 | 141 | 1.01E-34 | ||
| Gene3D | 73 | 219 | 147 | 2.70E-43 | ||
| ProSiteProfiles | 77 | 206 | 130 | 13.903 | ||
| Pfam | 126 | 205 | 80 | 3.10E-05 | ||
| PRINTS | 176 | 194 | 19 | 1.70E-59 | ||
| PRINTS | 202 | 223 | 22 | 1.70E-59 | ||
| ProSiteProfiles | 209 | 904 | 696 | 270.732 | ||
| SUPERFAMILY | 211 | 904 | 694 | 1.44E-254 | ||
| Pfam | 218 | 887 | 670 | 0 | ||
| Gene3D | 220 | 314 | 95 | 6.30E-36 | – | |
| PRINTS | 244 | 260 | 17 | 1.70E-59 | ||
| MobiDBLite | 268 | 298 | 31 | – | – | |
| PRINTS | 276 | 295 | 20 | 1.70E-59 | ||
| Gene3D | 332 | 423 | 92 | 5.10E-22 | ||
| PRINTS | 344 | 365 | 22 | 1.70E-59 | ||
| PANTHER | 389 | 904 | 516 | 0 | ||
| PANTHER | 389 | 904 | 516 | 0 | – | |
| PRINTS | 392 | 408 | 17 | 1.70E-59 | ||
| Gene3D | 425 | 557 | 133 | 8.50E-52 | – | |
| PRINTS | 431 | 450 | 20 | 1.70E-59 | ||
| PRINTS | 498 | 522 | 25 | 1.70E-59 | ||
| PRINTS | 543 | 560 | 18 | 4.50E-20 | ||
| Gene3D | 559 | 904 | 346 | 1.50E-143 | – | |
| PRINTS | 561 | 578 | 18 | 4.50E-20 | ||
| ProSitePatterns | 561 | 575 | 15 | – | ||
| PRINTS | 581 | 601 | 21 | 4.50E-20 | ||
| ProSitePatterns | 588 | 598 | 11 | – | ||
| PRINTS | 819 | 833 | 15 | 1.70E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj4g3v2528130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2528130.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.