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Lj4g3v2605810.1

Overview

Field	Value
Gene ID	Lj4g3v2605810
Transcript ID	Lj4g3v2605810.1
Related isoforms 2	Lj4g3v2605810.2 Lj4g3v2605810.3
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Glycine max] gi\|356557757\|ref\|XP_003547177.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23012:SF76 View details on PTHR23012:SF76 Search for proteins/transripts with this domain View external data on PTHR23012:SF76	40	262	223	8.60E-81	–
PANTHER	PTHR23012 View details on PTHR23012 Search for proteins/transripts with this domain View external data on PTHR23012	40	262	223	8.60E-81	IPR033275 Show description in modal box View details on IPR033275 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51292 View details on PS51292 Search for proteins/transripts with this domain View external data on PS51292	177	255	79	17.618	IPR011016 Show description in modal box View details on IPR011016 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	179	251	73	2.30E-16	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	180	251	72	3.11E-08	–
SMART	SM00744 View details on SM00744 Search for proteins/transripts with this domain View external data on SM00744	184	249	66	3.20E-14	IPR011016 Show description in modal box View details on IPR011016 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12906 View details on PF12906 Search for proteins/transripts with this domain View external data on PF12906	185	248	64	1.90E-06	IPR011016 Show description in modal box View details on IPR011016 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

LORE1 insertions 37

Expression data

Expression pattern

Expression pattern of Lj4g3v2605810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2605810.1, powered by CORGI.

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