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Lj4g3v2616110.2

Overview

Field Value
Gene ID Lj4g3v2616110
Transcript ID Lj4g3v2616110.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cicer arietinum] gi|502140826|ref|XP_004504351.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11774
1 232 232 3.40E-146 –
PANTHER
PTHR11774:SF11
1 232 232 3.40E-146
IPR026873
CDD
cd02894
1 232 232 9.10E-148
IPR026873
Gene3D
G3DSA:1.50.10.20
2 231 230 1.10E-93
IPR008930
SUPERFAMILY
SSF48239
2 231 230 4.01E-88
IPR008930
Pfam
PF00432
26 66 41 2.20E-11
IPR001330
Pfam
PF00432
74 115 42 3.80E-11
IPR001330
Pfam
PF00432
121 164 44 1.40E-15
IPR001330
Pfam
PF00432
170 212 43 2.20E-12
IPR001330
Pfam
PF00432
218 231 14 1.6
IPR001330

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004663
Molecular function Rab geranylgeranyltransferase activity Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family.
Subterm of
GO:0018344
Biological process Protein geranylgeranylation The covalent attachment of a geranylgeranyl group to a protein.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v2616110.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2616110.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.