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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2618550 |
| Transcript ID | Lj4g3v2618550.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Aquaporin NIP1-2 [Medicago truncatula] gi|357519149|ref|XP_003629863.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | – | – | |
| PANTHER | 1 | 222 | 222 | 3.10E-148 | ||
| PANTHER | 1 | 222 | 222 | 3.10E-148 | – | |
| Gene3D | 31 | 222 | 192 | 9.40E-62 | ||
| SUPERFAMILY | 32 | 222 | 191 | 4.45E-60 | ||
| Pfam | 33 | 223 | 191 | 2.50E-56 | ||
| PRINTS | 38 | 57 | 20 | 3.30E-38 | ||
| CDD | 38 | 221 | 184 | 1.01E-55 | ||
| Phobius | 40 | 60 | 21 | – | – | |
| TMHMM | 40 | 60 | 21 | – | – | |
| TIGRFAM | 42 | 221 | 180 | 6.60E-54 | ||
| Phobius | 61 | 66 | 6 | – | – | |
| Phobius | 67 | 88 | 22 | – | – | |
| TMHMM | 75 | 94 | 20 | – | – | |
| PRINTS | 77 | 101 | 25 | 3.30E-38 | ||
| Phobius | 89 | 117 | 29 | – | – | |
| ProSitePatterns | 95 | 103 | 9 | – | ||
| PRINTS | 114 | 133 | 20 | 3.30E-38 | ||
| TMHMM | 115 | 137 | 23 | – | – | |
| Phobius | 118 | 137 | 20 | – | – | |
| Phobius | 138 | 156 | 19 | – | – | |
| TMHMM | 152 | 174 | 23 | – | – | |
| Phobius | 157 | 175 | 19 | – | – | |
| PRINTS | 159 | 177 | 19 | 3.30E-38 | ||
| Phobius | 176 | 180 | 5 | – | – | |
| Phobius | 181 | 203 | 23 | – | – | |
| TMHMM | 181 | 203 | 23 | – | – | |
| PRINTS | 190 | 212 | 23 | 3.30E-38 | ||
| Phobius | 204 | 224 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v2618550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2618550.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.