Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2689680.1

Overview

Field Value
Gene ID Lj4g3v2689680
Transcript ID Lj4g3v2689680.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Acetolactate synthase small subunit [Medicago truncatula] gi|357519313|ref|XP_003629945.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR30239:SF3
1 271 271 1.00E-211 –
ProSiteProfiles
PS51671
1 62 62 11.817
IPR002912
PANTHER
PTHR30239
1 271 271 1.00E-211 –
CDD
cd04878
1 58 58 5.09E-20 –
ProDom
PD002844
1 60 60 3.00E-23 –
Gene3D
G3DSA:3.30.70.260
2 62 61 2.40E-20 –
TIGRFAM
TIGR00119
2 141 140 1.80E-48
IPR004789
Pfam
PF13710
2 57 56 2.20E-09 –
SUPERFAMILY
SSF55021
2 63 62 2.16E-12 –
SUPERFAMILY
SSF55021
63 143 81 3.77E-26 –
Gene3D
G3DSA:3.30.70.1150
67 143 77 1.20E-30 –
Pfam
PF10369
68 140 73 2.10E-28
IPR019455
ProDom
PD002844
218 271 54 8.00E-22 –
Gene3D
G3DSA:3.30.70.260
220 271 52 3.20E-20 –
SUPERFAMILY
SSF55021
221 269 49 1.24E-10 –
CDD
cd04878
222 271 50 3.76E-21 –
Pfam
PF01842
222 265 44 1.60E-07
IPR002912
ProSiteProfiles
PS51671
223 271 49 12.276
IPR002912

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009082
Biological process Branched-chain amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
Subterm of
GO:1990610
Molecular function Acetolactate synthase regulator activity Binds to and modulates the activity of acetolactate synthase.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj4g3v2689680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2689680.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.