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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2775550 |
| Transcript ID | Lj4g3v2775550.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356512789|ref|XP_003525098.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 178 | 178 | 0 | – | |
| Pfam | 1 | 591 | 591 | 0 | ||
| PANTHER | 1 | 178 | 178 | 0 | – | |
| Phobius | 1 | 381 | 381 | – | – | |
| SUPERFAMILY | 35 | 161 | 127 | 1.21E-06 | ||
| PANTHER | 227 | 588 | 362 | 0 | – | |
| PANTHER | 227 | 588 | 362 | 0 | – | |
| SUPERFAMILY | 282 | 421 | 140 | 1.21E-06 | ||
| TMHMM | 380 | 402 | 23 | – | – | |
| Phobius | 382 | 402 | 21 | – | – | |
| Phobius | 403 | 413 | 11 | – | – | |
| TMHMM | 414 | 436 | 23 | – | – | |
| Phobius | 414 | 432 | 19 | – | – | |
| Phobius | 433 | 451 | 19 | – | – | |
| TMHMM | 451 | 473 | 23 | – | – | |
| Phobius | 452 | 474 | 23 | – | – | |
| Phobius | 475 | 494 | 20 | – | – | |
| Phobius | 495 | 520 | 26 | – | – | |
| TMHMM | 498 | 520 | 23 | – | – | |
| Phobius | 521 | 531 | 11 | – | – | |
| TMHMM | 530 | 552 | 23 | – | – | |
| Phobius | 532 | 552 | 21 | – | – | |
| Phobius | 553 | 563 | 11 | – | – | |
| Phobius | 564 | 584 | 21 | – | – | |
| TMHMM | 565 | 584 | 20 | – | – | |
| Phobius | 585 | 605 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj4g3v2775550.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2775550.2, powered by CORGI.
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