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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2827890 |
| Transcript ID | Lj4g3v2827890.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Zinc finger protein [Medicago truncatula] gi|357520123|ref|XP_003630350.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | – | – | |
| Phobius | 1 | 265 | 265 | – | – | |
| PANTHER | 5 | 53 | 49 | 7.50E-117 | ||
| PANTHER | 5 | 53 | 49 | 7.50E-117 | – | |
| ProSiteProfiles | 99 | 165 | 67 | 12.944 | ||
| SMART | 109 | 159 | 51 | 5.60E-04 | ||
| Gene3D | 110 | 160 | 51 | 4.30E-08 | ||
| PANTHER | 115 | 182 | 68 | 7.50E-117 | – | |
| PANTHER | 115 | 182 | 68 | 7.50E-117 | ||
| SUPERFAMILY | 124 | 161 | 38 | 2.47E-06 | – | |
| TMHMM | 266 | 288 | 23 | – | – | |
| Phobius | 266 | 289 | 24 | – | – | |
| PANTHER | 268 | 354 | 87 | 7.50E-117 | – | |
| PANTHER | 268 | 354 | 87 | 7.50E-117 | ||
| Phobius | 290 | 300 | 11 | – | – | |
| TMHMM | 300 | 322 | 23 | – | – | |
| Phobius | 301 | 320 | 20 | – | – | |
| Phobius | 321 | 331 | 11 | – | – | |
| TMHMM | 332 | 349 | 18 | – | – | |
| Phobius | 332 | 349 | 18 | – | – | |
| Phobius | 350 | 357 | 8 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v2827890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2827890.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.