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Lj4g3v2858500.1

Overview

Field Value
Gene ID Lj4g3v2858500
Transcript ID Lj4g3v2858500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: patellin-5-like [Glycine max] gi|356527226|ref|XP_003532213.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 200 200 – –
PANTHER
PTHR23324:SF48
7 99 93 7.60E-240 –
PANTHER
PTHR23324
7 99 93 7.60E-240 –
Coils
Coil
89 109 21 – –
Gene3D
G3DSA:3.40.525.10
90 112 23 4.00E-64
IPR001251
PANTHER
PTHR23324
249 585 337 7.60E-240 –
PANTHER
PTHR23324:SF48
249 585 337 7.60E-240 –
Pfam
PF03765
250 289 40 1.90E-08
IPR011074
SUPERFAMILY
SSF46938
264 305 42 1.96E-14
IPR011074
Gene3D
G3DSA:3.40.525.10
264 521 258 4.00E-64
IPR001251
SMART
SM01100
265 290 26 7.60E-08
IPR011074
PRINTS
PR00180
268 290 23 9.20E-05
IPR001071
ProSiteProfiles
PS50191
304 479 176 18.713
IPR001251
SMART
SM00516
309 476 168 1.70E-37
IPR001251
CDD
cd00170
310 474 165 4.14E-40 –
Pfam
PF00650
313 473 161 7.50E-30
IPR001251
SUPERFAMILY
SSF52087
314 476 163 3.27E-40
IPR001251
PRINTS
PR00180
431 450 20 9.20E-05
IPR001071
ProSiteProfiles
PS50866
483 584 102 11.606
IPR009038
SUPERFAMILY
SSF101576
484 582 99 2.22E-07
IPR009038

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v2858500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2858500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.