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Lj4g3v2871880.1

Overview

Field Value
Gene ID Lj4g3v2871880
Transcript ID Lj4g3v2871880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera] gi|225456495|ref|XP_002280924.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
16 54 39 – –
PANTHER
PTHR31190:SF30
53 117 65 2.10E-46 –
PANTHER
PTHR31190
53 117 65 2.10E-46 –
Gene3D
G3DSA:3.30.730.10
54 113 60 5.50E-32
IPR001471
SMART
SM00380
55 118 64 1.30E-36
IPR001471
CDD
cd00018
55 113 59 5.32E-33
IPR001471
Pfam
PF00847
55 104 50 1.60E-13
IPR001471
ProSiteProfiles
PS51032
55 112 58 24.474
IPR001471
SUPERFAMILY
SSF54171
55 113 59 2.29E-21
IPR016177
PRINTS
PR00367
56 67 12 2.00E-11
IPR001471
PRINTS
PR00367
78 94 17 2.00E-11
IPR001471
MobiDBLite
mobidb-lite
181 226 46 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v2871880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2871880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.