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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31190
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 73 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.046s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0075069.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF098-like [Cicer arietinum] gi|502115014|ref|XP_004495105.1| chr0 28431701 28432588 +
1 domain prediction
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Lj0g3v0096239.1
n.a. ethylene-responsive factor 2 [Halimodendron halodendron] gi|223038250|gb|ACM79120.1| chr0 40576185 40578326 +
1 domain prediction
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Lj0g3v0102679.1
n.a. transcription factor EREBP-like protein [Cicer arietinum] gi|24817250|emb|CAD56217.1| chr0 43713926 43716229 -
1 domain prediction
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Lj0g3v0114779.1
n.a. CM0545.620.nc [Lotus japonicus] gi|164564747|dbj|BAF98227.1| chr0 50336772 50337256 +
1 domain prediction
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Lj0g3v0242059.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237577|dbj|BAG50065.1| chr0 125584503 125584778 -
1 domain prediction
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Lj0g3v0250529.1
n.a. n.a. chr0 129875517 129877507 -
1 domain prediction
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Lj0g3v0250539.1
n.a. PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max] gi|356520778|ref|XP_003529037.1| chr0 129875517 129876467 +
1 domain prediction
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Lj0g3v0317699.1
n.a. ethylene response factor 11 [Medicago sativa] gi|353078622|gb|AEQ64867.1| chr0 165993283 165994761 -
1 domain prediction
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Lj0g3v0332559.1
n.a. PREDICTED: ethylene-responsive transcription factor 1B-like [Glycine max] gi|356536967|ref|XP_003537003.1| chr0 174033925 174035421 +
1 domain prediction
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Lj0g3v0338549.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max] gi|356574758|ref|XP_003555512.1| chr0 177237785 177238493 +
1 domain prediction
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Lj1g3v1222700.1
n.a. Ethylene-responsive transcription factor ERF110 [Medicago truncatula] gi|357464465|ref|XP_003602514.1| chr1 15055348 15057344 -
1 domain prediction
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Lj1g3v2926270.1
n.a. PREDICTED: ethylene-responsive transcription factor 1-like [Cicer arietinum] gi|502106430|ref|XP_004492940.1| chr1 32989493 32990631 +
1 domain prediction
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Lj1g3v3137730.1
n.a. Ethylene-responsive transcription factor [Medicago truncatula] gi|357502687|ref|XP_003621632.1| chr1 35668523 35671179 +
1 domain prediction
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Lj1g3v3904450.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF113-like [Glycine max] gi|356561162|ref|XP_003548854.1| chr1 45505006 45507137 +
1 domain prediction
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Lj1g3v4483640.1
n.a. PREDICTED: ethylene-responsive transcription factor 15-like [Glycine max] gi|356503610|ref|XP_003520600.1| chr1 52622762 52623916 +
1 domain prediction
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Lj1g3v4865580.1
n.a. ethylene-responsive element binding factor 4 [Arachis hypogaea] gi|407317207|gb|AFU07641.1| chr1 59080176 59081573 -
1 domain prediction
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Lj2g3v0740680.1
n.a. PREDICTED: ethylene-responsive transcription factor CRF4-like [Brachypodium distachyon] gi|357135778|ref|XP_003569485.1| chr2 11608992 11609488 +
1 domain prediction
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Lj2g3v1989190.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237565|dbj|BAG50059.1| chr2 29788974 29790907 -
1 domain prediction
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Lj2g3v2902380.1
n.a. CM0545.620.nc [Lotus japonicus] gi|164564747|dbj|BAF98227.1| chr2 37780554 37784704 -
1 domain prediction
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Lj3g3v0538480.1
n.a. PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max] gi|356520778|ref|XP_003529037.1| chr3 6088408 6089506 +
1 domain prediction
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Lj3g3v0548550.1
n.a. PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max] gi|356520778|ref|XP_003529037.1| chr3 6099971 6101200 +
1 domain prediction
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Lj3g3v0549640.1
n.a. PREDICTED: ethylene-responsive transcription factor 13-like [Glycine max] gi|356504573|ref|XP_003521070.1| chr3 6141764 6142184 +
1 domain prediction
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Lj3g3v2575860.1
n.a. PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 [Cicer arietinum] gi|502156606|ref|XP_004510558.1| chr3 31401963 31405298 +
1 domain prediction
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Lj4g3v2290260.1
n.a. ethylene-responsive transcription factor RAP2-3-like [Glycine max] gi|374253830|ref|NP_001243393.1| chr4 31857578 31859223 -
1 domain prediction
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Lj4g3v2775600.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237573|dbj|BAG50063.1| chr4 37194296 37196219 +
1 domain prediction
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Lj4g3v2871880.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera] gi|225456495|ref|XP_002280924.1| chr4 38402735 38406087 -
1 domain prediction
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Lj5g3v1062530.1
n.a. PREDICTED: ethylene-responsive transcription factor 1B-like [Glycine max] gi|356545857|ref|XP_003541350.1| chr5 17284444 17285398 +
1 domain prediction
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Lj5g3v1062540.1
n.a. n.a. chr5 17284552 17297631 -
1 domain prediction
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Lj5g3v1072600.1
n.a. PREDICTED: ethylene-responsive transcription factor 1B-like [Glycine max] gi|356545859|ref|XP_003541351.1| chr5 17333764 17334579 +
1 domain prediction
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Lj5g3v1156330.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF098-like [Fragaria vesca subsp]. vesca] gi|470111959|ref|XP_004292207.1| chr5 18439091 18439929 +
1 domain prediction
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Lj5g3v1167370.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237553|dbj|BAG50053.1| chr5 18503361 18505203 +
1 domain prediction
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Lj5g3v1602450.1
n.a. transcription factor AP2-EREBP [Lotus japonicus] gi|193237577|dbj|BAG50065.1| chr5 23405516 23406929 -
1 domain prediction
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Lj5g3v1937400.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF110-like [Cicer arietinum] gi|502118939|ref|XP_004496448.1| chr5 27342323 27358508 -
1 domain prediction
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Lj5g3v1937410.1
n.a. PREDICTED: ethylene-responsive transcription factor ERF110-like [Cicer arietinum] gi|502118939|ref|XP_004496448.1| chr5 27356084 27358508 -
1 domain prediction
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Lj6g3v0030190.1
n.a. PREDICTED: ethylene-responsive transcription factor 1B-like [Cicer arietinum] gi|502122629|ref|XP_004497839.1| chr6 631468 632462 -
1 domain prediction
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Lj6g3v2006230.1
n.a. Ethylene-responsive transcription factor [Medicago truncatula] gi|357446829|ref|XP_003593690.1| chr6 23426398 23427771 -
1 domain prediction
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LotjaGi1g1v0314000.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|A0A0U1UPU3|A0A0U1UPU3_LOTCO AP2/ERF; Found in the gene: LotjaGi1g1v0314000 LjG1.1_chr1 75892215 75895011 -
1 domain prediction
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LotjaGi1g1v0314000.2
n.a. Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|A0A0U1UPU3|A0A0U1UPU3_LOTCO AP2/ERF; Found in the gene: LotjaGi1g1v0314000 LjG1.1_chr1 75892215 75895011 -
1 domain prediction
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LotjaGi1g1v0332700.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|A0A151SY38|A0A151SY38_CAJCA Ethylene-responsive transcription factor ERF114 family; Found in the gene: LotjaGi1g1v0332700 LjG1.1_chr1 79013473 79016882 -
1 domain prediction
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LotjaGi1g1v0496200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT2G44840.1 ethylene-responsive element binding factor 13; Swiss-Prot: sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1; TrEMBL-Plants: tr|A0A072U149|A0A072U149_MEDTR AP2-domain DNA-binding protein; Found in the gene: LotjaGi1g1v0496200 LjG1.1_chr1 101114004 101115135 +
1 domain prediction
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LotjaGi1g1v0527700.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G13330.1 related to AP2 6l; Swiss-Prot: sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113; TrEMBL-Plants: tr|I3SZ77|I3SZ77_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0527700 LjG1.1_chr1 105454476 105457211 +
1 domain prediction
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LotjaGi1g1v0633400.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G13330.1 related to AP2 6l; Swiss-Prot: sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113; TrEMBL-Plants: tr|K7MXN6|K7MXN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633400 LjG1.1_chr1 118747202 118750041 +
1 domain prediction
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LotjaGi1g1v0710100.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|A0A140WWG1|A0A140WWG1_LOTCO AP2/ERF; Found in the gene: LotjaGi1g1v0710100 LjG1.1_chr1 127828110 127829383 -
1 domain prediction
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LotjaGi1g1v0710200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT3G23230.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LSX0|ERF96_ARATH Ethylene-responsive transcription factor ERF096; TrEMBL-Plants: tr|I3S7L2|I3S7L2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0710200 LjG1.1_chr1 127854639 127855307 -
1 domain prediction
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LotjaGi1g1v0762800.1
n.a. Ethylene-responsive transcription factor; TAIR: AT2G47520.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071; TrEMBL-Plants: tr|D9ICY5|D9ICY5_SOYBN ERF protein; Found in the gene: LotjaGi1g1v0762800 LjG1.1_chr1 133553072 133556746 -
1 domain prediction
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LotjaGi2g1v0104500.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G13330.1 related to AP2 6l; Swiss-Prot: sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113; TrEMBL-Plants: tr|V7C0M5|V7C0M5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104500 LjG1.1_chr2 34994466 34996640 +
1 domain prediction
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LotjaGi2g1v0128200.1
n.a. Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|B3IX37|B3IX37_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi2g1v0128200 LjG1.1_chr2 46967377 46979606 -
1 domain prediction
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LotjaGi2g1v0277500.1
n.a. Ethylene-responsive transcription factor; TAIR: AT1G68550.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9CA27|EF118_ARATH Ethylene-responsive transcription factor ERF118; TrEMBL-Plants: tr|A0A0B2QYX4|A0A0B2QYX4_GLYSO Ethylene-responsive transcription factor ERF118; Found in the gene: LotjaGi2g1v0277500 LjG1.1_chr2 74915757 74918686 -
1 domain prediction
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LotjaGi2g1v0420700.1
n.a. Ethylene-responsive transcription factor; TAIR: AT4G17500.1 ethylene responsive element binding factor 1; Swiss-Prot: sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A; TrEMBL-Plants: tr|B3IX32|B3IX32_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi2g1v0420700 LjG1.1_chr2 91861034 91863318 -
1 domain prediction
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LotjaGi3g1v0066300.1
n.a. Ethylene-responsive transcription factor; TAIR: AT2G44840.1 ethylene-responsive element binding factor 13; Swiss-Prot: sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13; TrEMBL-Plants: tr|A0A140WWF3|A0A140WWF3_LOTCO AP2/ERF; Found in the gene: LotjaGi3g1v0066300 LjG1.1_chr3 7044350 7045461 +
1 domain prediction
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