Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2951310.1

Overview

Field Value
Gene ID Lj4g3v2951310
Transcript ID Lj4g3v2951310.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330-like [Vitis vinifera] gi|359496523|ref|XP_003635255.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 – –
TMHMM
TMhelix
5 27 23 – –
Phobius
TRANSMEMBRANE
6 27 22 – –
PANTHER
PTHR27002
12 211 200 7.50E-99 –
PANTHER
PTHR27002:SF84
12 211 200 7.50E-99 –
ProSiteProfiles
PS50927
27 146 120 18.361
IPR001480
Phobius
CYTOPLASMIC_DOMAIN
28 211 184 – –
Gene3D
G3DSA:2.90.10.10
28 154 127 1.40E-27
IPR001480
SMART
SM00108
33 148 116 4.80E-32
IPR001480
CDD
cd00028
33 148 116 4.04E-27 –
SUPERFAMILY
SSF51110
64 179 116 9.29E-28
IPR001480
Pfam
PF01453
73 175 103 1.40E-29
IPR001480

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v2951310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2951310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.