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Lj4g3v3099550.2

Overview

Field Value
Gene ID Lj4g3v3099550
Transcript ID Lj4g3v3099550.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description NBS-LRR resistance-like protein [Medicago truncatula] gi|357521387|ref|XP_003630982.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11017
1 125 125 1.70E-64 –
PANTHER
PTHR11017:SF174
1 125 125 1.70E-64 –
Gene3D
G3DSA:3.80.10.10
24 158 135 1.40E-11
IPR032675
SUPERFAMILY
SSF52058
25 273 249 3.18E-16
IPR032675
Pfam
PF07725
57 76 20 7.30E-05
IPR011713
SUPERFAMILY
SSF52058
225 485 261 2.38E-37
IPR032675
Gene3D
G3DSA:3.80.10.10
227 484 258 5.00E-36
IPR032675
PANTHER
PTHR11017:SF174
231 274 44 1.70E-64 –
PANTHER
PTHR11017
231 274 44 1.70E-64 –
PANTHER
PTHR11017:SF174
386 514 129 1.70E-64 –
PANTHER
PTHR11017
386 514 129 1.70E-64 –
PANTHER
PTHR11017:SF174
549 690 142 1.70E-64 –
PANTHER
PTHR11017
549 690 142 1.70E-64 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj4g3v3099550.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3099550.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.