Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v3113050.1

Overview

Field Value
Gene ID Lj4g3v3113050
Transcript ID Lj4g3v3113050.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: histone-lysine N-methyltransferase setd3-like [Glycine max] gi|356524495|ref|XP_003530864.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 22 22 – –
PANTHER
PTHR13271
6 466 461 6.00E-180 –
PANTHER
PTHR13271:SF25
6 466 461 6.00E-180 –
SUPERFAMILY
SSF82199
31 295 265 2.62E-46 –
Gene3D
G3DSA:3.90.1410.10
32 291 260 5.50E-50 –
SMART
SM00317
46 283 238 2.70E-09
IPR001214
ProSiteProfiles
PS50280
46 277 232 10.189
IPR001214
Pfam
PF00856
57 277 221 1.10E-10
IPR001214
SUPERFAMILY
SSF81822
287 298 12 1.02E-21
IPR015353
Gene3D
G3DSA:3.90.1420.10
294 467 174 2.70E-17
IPR015353
SUPERFAMILY
SSF81822
328 466 139 1.02E-21
IPR015353
Pfam
PF09273
328 447 120 2.00E-13
IPR015353

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 24

Expression data

Expression pattern

Expression pattern of Lj4g3v3113050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3113050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.