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IPR015353

Description

IPR015353 is a Rubisco LSMT, substrate-binding domain.

<p>This domain adopts a multihelical structure, with an irregular array of long and short α-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex [[cite:PUB00029671]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 22

Transcript Name Description Predicted domains Domain count
Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] gi|357507175|ref|XP_003623876.1| 9
Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] gi|357507175|ref|XP_003623876.1| 8
PREDICTED: protein SET DOMAIN GROUP 40-like [Cicer arietinum] gi|502096540|ref|XP_004490774.1| 11
PREDICTED: protein SET DOMAIN GROUP 40-like [Glycine max] gi|356553227|ref|XP_003544959.1| 8
PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi|356521657|ref|XP_003529470.1| 20
3-hydroxy-3-methylglutaryl-coenzyme A reductase [Medicago truncatula] gi|357479689|ref|XP_003610130.1| 3
PREDICTED: histone-lysine N-methyltransferase setd3-like [Glycine max] gi|356524495|ref|XP_003530864.1| 13
PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi|356547583|ref|XP_003542190.1| 14
PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi|356556146|ref|XP_003546388.1| 6
Protein SET DOMAIN GROUP 40; TAIR: AT5G17240.2 SET domain group 40; Swiss-Prot: sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr|V7B812|V7B812_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0100500 7
SET domain group 40 protein; TAIR: AT5G17240.1 SET domain group 40; Swiss-Prot: sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr|G7KFS1|G7KFS1_MEDTR SET domain group 40 protein; Found in the gene: LotjaGi1g1v0100500 10
Methyltransferase; TAIR: AT5G14260.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q9XI84|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|G7KNL1|G7KNL1_MEDTR Rubisco methyltransferase family protein; Found in the gene: LotjaGi2g1v0086200 9
Methyltransferase; TAIR: AT5G14260.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q9XI84|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|G7KNL1|G7KNL1_MEDTR Rubisco methyltransferase family protein; Found in the gene: LotjaGi2g1v0086200 9
Protein N-methyltransferase; TAIR: AT1G14030.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A072UM69|A0A072UM69_MEDTR Rubisco large subunit N-methyltransferase; Found in the gene: LotjaGi4g1v0089800 21
Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 14
Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 14
Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr|A0A0L9T8E4|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600 14
Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 15
Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 13
Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400 15
Protein N-methyltransferase; TAIR: AT4G20130.1 plastid transcriptionally active 14; Swiss-Prot: sp|Q84JF5|PTA14_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; TrEMBL-Plants: tr|A0A0R0I3Y4|A0A0R0I3Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0245200 12
Protein N-methyltransferase; TAIR: AT4G20130.1 plastid transcriptionally active 14; Swiss-Prot: sp|Q84JF5|PTA14_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; TrEMBL-Plants: tr|B9GYG2|B9GYG2_POPTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0245200 12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF82199 SUPERFAMILY 1 4.55