Domain Predictions — View

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IPR015353

Source: InterPro

Description

IPR015353 is a Rubisco LSMT, substrate-binding domain.

<p>This domain adopts a multihelical structure, with an irregular array of long and short α-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex [[cite:PUB00029671]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 22

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v2624870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] gi\|357507175\|ref\|XP_003623876.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 PF00856 PS50280 PTHR13271 PTHR13271:SF41 SSF82199	9
Lj1g3v2624870.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] gi\|357507175\|ref\|XP_003623876.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 PF00856 PTHR13271 PTHR13271:SF41 SSF82199	8
Lj2g3v2507850.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein SET DOMAIN GROUP 40-like [Cicer arietinum] gi\|502096540\|ref\|XP_004490774.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF19 SSF81822 SSF82199	11
Lj2g3v2507850.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein SET DOMAIN GROUP 40-like [Glycine max] gi\|356553227\|ref\|XP_003544959.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR015353 PF09273 PTHR13271 PTHR13271:SF19 SSF81822 SSF82199	8
Lj4g3v0684250.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi\|356521657\|ref\|XP_003529470.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR011192 IPR015353 NON_CYTOPLASMIC_DOMAIN PF00856 PF09273 PIRSF009328 PS50280 PS51583 PTHR13271 PTHR13271:SF29 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00317 SSF81822 SSF82199	20
Lj4g3v2094890.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	3-hydroxy-3-methylglutaryl-coenzyme A reductase [Medicago truncatula] gi\|357479689\|ref\|XP_003610130.1\|	Domains G3DSA:3.90.1420.10 IPR015353 PF09273	3
Lj4g3v3113050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase setd3-like [Glycine max] gi\|356524495\|ref\|XP_003530864.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF25 SM00317 SSF81822 SSF82199 SignalP-TM_GRAM_POSITIVE	13
Lj6g3v0217170.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi\|356547583\|ref\|XP_003542190.1\|	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR011192 IPR015353 PF00856 PF09273 PIRSF009328 PS50280 PTHR13271 PTHR13271:SF44 SM00317 SSF81822 SSF82199	14
Lj6g3v1392440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi\|356556146\|ref\|XP_003546388.1\|	Domains G3DSA:3.90.1420.10 IPR015353 PF09273 PTHR13271 PTHR13271:SF23 SSF81822	6
LotjaGi1g1v0100500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein SET DOMAIN GROUP 40; TAIR: AT5G17240.2 SET domain group 40; Swiss-Prot: sp\|Q6NQJ8\|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr\|V7B812\|V7B812_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0100500	Domains IPR015353 IPR036464 PF09273 PTHR13271 PTHR13271:SF91 SSF81822 SSF82199	7
LotjaGi1g1v0100500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SET domain group 40 protein; TAIR: AT5G17240.1 SET domain group 40; Swiss-Prot: sp\|Q6NQJ8\|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr\|G7KFS1\|G7KFS1_MEDTR SET domain group 40 protein; Found in the gene: LotjaGi1g1v0100500	Domains IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF91 SSF81822 SSF82199	10
LotjaGi2g1v0086200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Methyltransferase; TAIR: AT5G14260.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q9XI84\|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr\|G7KNL1\|G7KNL1_MEDTR Rubisco methyltransferase family protein; Found in the gene: LotjaGi2g1v0086200	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR015353 IPR036464 PF09273 PTHR13271 PTHR13271:SF9 SSF81822 SSF82199	9
LotjaGi2g1v0086200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Methyltransferase; TAIR: AT5G14260.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q9XI84\|RBCMT_ARATH [Fructose]-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic; TrEMBL-Plants: tr\|G7KNL1\|G7KNL1_MEDTR Rubisco methyltransferase family protein; Found in the gene: LotjaGi2g1v0086200	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR015353 IPR036464 PF09273 PTHR13271 PTHR13271:SF9 SSF81822 SSF82199	9
LotjaGi4g1v0089800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein N-methyltransferase; TAIR: AT1G14030.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr\|A0A072UM69\|A0A072UM69_MEDTR Rubisco large subunit N-methyltransferase; Found in the gene: LotjaGi4g1v0089800	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR011192 IPR015353 IPR036464 NON_CYTOPLASMIC_DOMAIN PF00856 PF09273 PIRSF009328 PS50280 PS51583 PTHR13271 PTHR13271:SF55 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00317 SSF81822 SSF82199	21
LotjaGi4g1v0456600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q5ZML9\|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr\|A0A0L9T8E4\|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF8 SM00317 SSF81822 SSF82199 SignalP-TM	14
LotjaGi4g1v0456600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q5ZML9\|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr\|A0A0L9T8E4\|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF8 SM00317 SSF81822 SSF82199 SignalP-TM	14
LotjaGi4g1v0456600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G24610.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q5ZML9\|SETD3_CHICK Histone-lysine N-methyltransferase setd3; TrEMBL-Plants: tr\|A0A0L9T8E4\|A0A0L9T8E4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0456600	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF8 SM00317 SSF81822 SSF82199 SignalP-TM	14
LotjaGi6g1v0025400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr\|A0A0R0GH45\|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR011192 IPR015353 IPR036464 PF00856 PF09273 PIRSF009328 PS50280 PTHR13271 PTHR13271:SF98 SM00317 SSF81822 SSF82199	15
LotjaGi6g1v0025400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr\|A0A0R0GH45\|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF98 SM00317 SSF81822 SSF82199	13
LotjaGi6g1v0025400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr\|A0A0R0GH45\|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR011192 IPR015353 IPR036464 PF00856 PF09273 PIRSF009328 PS50280 PTHR13271 PTHR13271:SF98 SM00317 SSF81822 SSF82199	15
LotjaGi6g1v0245200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein N-methyltransferase; TAIR: AT4G20130.1 plastid transcriptionally active 14; Swiss-Prot: sp\|Q84JF5\|PTA14_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; TrEMBL-Plants: tr\|A0A0R0I3Y4\|A0A0R0I3Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0245200	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF54 SSF81822 SSF82199	12
LotjaGi6g1v0245200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein N-methyltransferase; TAIR: AT4G20130.1 plastid transcriptionally active 14; Swiss-Prot: sp\|Q84JF5\|PTA14_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14; TrEMBL-Plants: tr\|B9GYG2\|B9GYG2_POPTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0245200	Domains G3DSA:3.90.1410.10 G3DSA:3.90.1420.10 IPR001214 IPR015353 IPR036464 PF00856 PF09273 PS50280 PTHR13271 PTHR13271:SF54 SSF81822 SSF82199	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
SSF82199	SUPERFAMILY	1	4.55