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Lj5g3v0391490.1

Overview

Field Value
Gene ID Lj5g3v0391490
Transcript ID Lj5g3v0391490.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcineurin B-like protein 10-like isoform X1 [Cicer arietinum] gi|502125364|ref|XP_004498906.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 21 21 – –
TMHMM
TMhelix
22 44 23 – –
Phobius
TRANSMEMBRANE
22 47 26 – –
Phobius
CYTOPLASMIC_DOMAIN
48 257 210 – –
PANTHER
PTHR23056
52 257 206 1.40E-128 –
PANTHER
PTHR23056:SF26
52 257 206 1.40E-128 –
Gene3D
G3DSA:1.10.238.10
65 249 185 2.30E-46
IPR011992
SUPERFAMILY
SSF47473
66 249 184 7.10E-42
IPR011992
ProSiteProfiles
PS50222
114 149 36 11.947
IPR002048
SMART
SM00054
118 146 29 0.17
IPR002048
Pfam
PF13833
122 141 20 0.018
IPR002048
PRINTS
PR00450
122 143 22 2.10E-07 –
ProSiteProfiles
PS50222
151 186 36 10.859
IPR002048
SMART
SM00054
155 183 29 4.7
IPR002048
Pfam
PF13499
159 223 65 7.30E-09
IPR002048
CDD
cd00051
159 225 67 2.88E-11
IPR002048
PRINTS
PR00450
169 187 19 2.10E-07 –
ProSiteProfiles
PS50222
195 230 36 12.087
IPR002048
SMART
SM00054
199 227 29 0.0023
IPR002048
ProSitePatterns
PS00018
208 220 13 –
IPR018247
PRINTS
PR00450
215 235 21 2.10E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj5g3v0391490.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0391490.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.