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Lj5g3v0404800.1

Overview

Field Value
Gene ID Lj5g3v0404800
Transcript ID Lj5g3v0404800.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glycine dehydrogenase [decarboxylating] gi|502125338|ref|XP_004498895.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11773:SF4
2 1027 1026 0 –
PANTHER
PTHR11773
2 1027 1026 0
IPR020581
Hamap
MF_00711
88 1027 940 23.389
IPR003437
SUPERFAMILY
SSF53383
97 524 428 2.27E-100
IPR015424
TIGRFAM
TIGR00461
97 1027 931 0
IPR003437
Pfam
PF02347
97 523 427 6.10E-182
IPR020581
CDD
cd00613
146 523 378 2.00E-170
IPR020581
Gene3D
G3DSA:3.40.640.10
173 399 227 5.70E-19
IPR015421
Pfam
PF02347
555 816 262 1.70E-11
IPR020581
SUPERFAMILY
SSF53383
558 975 418 9.26E-94
IPR015424
CDD
cd00613
566 961 396 5.38E-155
IPR020581
Gene3D
G3DSA:3.40.640.10
585 826 242 2.30E-39
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004375
Molecular function Glycine dehydrogenase (decarboxylating) activity Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2.
Subterm of
GO:0006544
Biological process Glycine metabolic process The chemical reactions and pathways involving glycine, aminoethanoic acid.
Subterm of
GO:0006546
Biological process Glycine catabolic process The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 36

Expression data

Expression pattern

Expression pattern of Lj5g3v0404800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0404800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.