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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0529230 |
| Transcript ID | Lj5g3v0529230.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | EamA-like transporter family isoform 1 [Theobroma cacao] gi|508782171|gb|EOY29427.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| PANTHER | 1 | 328 | 328 | 4.60E-146 | – | |
| PANTHER | 1 | 328 | 328 | 4.60E-146 | – | |
| TMHMM | 5 | 22 | 18 | – | – | |
| Phobius | 7 | 18 | 12 | – | – | |
| Phobius | 19 | 23 | 5 | – | – | |
| Phobius | 24 | 38 | 15 | – | – | |
| TMHMM | 37 | 56 | 20 | – | – | |
| Phobius | 39 | 60 | 22 | – | – | |
| Phobius | 61 | 138 | 78 | – | – | |
| Pfam | 138 | 216 | 79 | 2.80E-06 | ||
| Phobius | 139 | 158 | 20 | – | – | |
| SUPERFAMILY | 148 | 219 | 72 | 3.92E-06 | – | |
| Phobius | 159 | 169 | 11 | – | – | |
| TMHMM | 170 | 192 | 23 | – | – | |
| Phobius | 170 | 190 | 21 | – | – | |
| Phobius | 191 | 201 | 11 | – | – | |
| TMHMM | 202 | 223 | 22 | – | – | |
| Phobius | 202 | 221 | 20 | – | – | |
| Phobius | 222 | 240 | 19 | – | – | |
| TMHMM | 236 | 258 | 23 | – | – | |
| Phobius | 241 | 261 | 21 | – | – | |
| Phobius | 262 | 272 | 11 | – | – | |
| TMHMM | 273 | 295 | 23 | – | – | |
| Phobius | 273 | 292 | 20 | – | – | |
| Phobius | 293 | 311 | 19 | – | – | |
| Phobius | 312 | 329 | 18 | – | – | |
| Phobius | 330 | 331 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj5g3v0529230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0529230.1, powered by CORGI.
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