Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v0586630.1

Overview

Field Value
Gene ID Lj5g3v0586630
Transcript ID Lj5g3v0586630.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein 622-like [Glycine max] gi|356563786|ref|XP_003550140.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13182:SF8
1 410 410 3.30E-166 –
PANTHER
PTHR13182
1 410 410 3.30E-166 –
SMART
SM00451
1 35 35 0.0015
IPR003604
SUPERFAMILY
SSF57667
3 36 34 1.01E-05 –
SMART
SM00355
4 28 25 85
IPR015880
ProSitePatterns
PS00028
6 28 23 –
IPR007087
SMART
SM00451
65 99 35 9.7
IPR003604
SUPERFAMILY
SSF57667
65 98 34 2.66E-05 –
SMART
SM00355
68 92 25 1.8
IPR015880
ProSitePatterns
PS00028
70 92 23 –
IPR007087
MobiDBLite
mobidb-lite
89 177 89 – –
SUPERFAMILY
SSF57667
171 243 73 1.01E-07 –
SMART
SM00355
184 206 23 120
IPR015880
Pfam
PF12756
186 287 102 4.30E-25
IPR015880
SMART
SM00355
235 262 28 7.2
IPR015880

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj5g3v0586630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0586630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.