Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003604
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 47 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.113s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0102879.1
n.a. PREDICTED: zinc finger protein 593-like [Cucumis sativus] gi|449451052|ref|XP_004143276.1| chr0 43822622 43824613 +
2 domain predictions
2 GO terms
Lj0g3v0192159.1
n.a. PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max] gi|356511845|ref|XP_003524632.1| chr0 93887492 93888613 -
2 domain predictions
2 GO terms
Lj0g3v0199689.1
n.a. Uncharacterized protein TCM_005599 [Theobroma cacao] gi|508704432|gb|EOX96328.1| chr0 98178453 98184823 +
2 domain predictions
2 GO terms
Lj0g3v0199689.2
n.a. Uncharacterized protein TCM_005599 [Theobroma cacao] gi|508704432|gb|EOX96328.1| chr0 98178453 98184823 +
2 domain predictions
2 GO terms
Lj1g3v3006710.1
n.a. PREDICTED: zinc finger RNA-binding protein-like [Cicer arietinum] gi|502126918|ref|XP_004499491.1| chr1 34165436 34169000 -
2 domain predictions
2 GO terms
Lj1g3v3006720.1
n.a. PREDICTED: zinc finger RNA-binding protein-like [Cicer arietinum] gi|502126918|ref|XP_004499491.1| chr1 34170804 34173843 -
2 domain predictions
2 GO terms
Lj1g3v4789540.1
n.a. C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao] gi|508719731|gb|EOY11628.1| chr1 57631398 57644847 +
2 domain predictions
2 GO terms
Lj3g3v0642600.1
n.a. PREDICTED: splicing factor 3A subunit 2-like [Cicer arietinum] gi|502155744|ref|XP_004510177.1| chr3 6979126 6982393 +
2 domain predictions
2 GO terms
Lj4g3v0387230.1
n.a. HVA22-like protein a [Medicago truncatula] gi|357476185|ref|XP_003608378.1| chr4 5070549 5073773 -
2 domain predictions
2 GO terms
Lj4g3v0387230.2
n.a. HVA22-like protein a [Medicago truncatula] gi|357476187|ref|XP_003608379.1| chr4 5070549 5074758 -
2 domain predictions
2 GO terms
Lj4g3v0387230.3
n.a. HVA22-like protein a [Medicago truncatula] gi|357476185|ref|XP_003608378.1| chr4 5070549 5074758 -
2 domain predictions
2 GO terms
Lj4g3v0388240.1
n.a. HVA22-like protein a [Medicago truncatula] gi|357476187|ref|XP_003608379.1| chr4 5078783 5079662 +
2 domain predictions
2 GO terms
Lj4g3v0575060.1
n.a. WW domain-binding protein [Medicago truncatula] gi|357475471|ref|XP_003608021.1| chr4 9080610 9084715 +
2 domain predictions
2 GO terms
Lj4g3v1719700.1
n.a. PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max] gi|356511845|ref|XP_003524632.1| chr4 24662782 24665557 -
2 domain predictions
2 GO terms
Lj4g3v1983680.1
n.a. HVA22-like protein a [Medicago truncatula] gi|357476185|ref|XP_003608378.1| chr4 27691382 27696263 -
2 domain predictions
2 GO terms
Lj4g3v1985740.1
n.a. Uncharacterized protein TCM_037031 [Theobroma cacao] gi|508782264|gb|EOY29520.1| chr4 27713260 27714807 -
2 domain predictions
2 GO terms
Lj5g3v0586630.1
n.a. PREDICTED: zinc finger protein 622-like [Glycine max] gi|356563786|ref|XP_003550140.1| chr5 6894335 6897123 +
2 domain predictions
2 GO terms
Lj5g3v1263990.1
n.a. C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao] gi|508727165|gb|EOY19062.1| chr5 20131729 20134147 +
2 domain predictions
2 GO terms
Lj5g3v1671380.1
n.a. PREDICTED: U1 small nuclear ribonucleoprotein C-like isoform X1 [Cicer arietinum] gi|502117894|ref|XP_004495998.1| chr5 23847168 23850241 -
2 domain predictions
2 GO terms
LotjaGi1g1v0135400.1
n.a. HVA22-like protein; TAIR: AT1G74520.1 HVA22 homologue A; Swiss-Prot: sp|Q9S7V4|HA22A_ARATH HVA22-like protein a; TrEMBL-Plants: tr|A0A0L9UXN1|A0A0L9UXN1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135400 LjG1.1_chr1 21815409 21819492 -
2 domain predictions
2 GO terms
LotjaGi1g1v0190900.1
n.a. Zinc finger protein; TAIR: AT5G61190.1 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|Q8AVN9|ZN346_XENLA Zinc finger protein 346; TrEMBL-Plants: tr|A0A072UVJ5|A0A072UVJ5_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi1g1v0190900 LjG1.1_chr1 37648064 37653299 +
2 domain predictions
2 GO terms
LotjaGi1g1v0509600_LC.1
n.a. Zinc finger protein; TAIR: AT3G29310.1 calmodulin-binding protein-like protein; Swiss-Prot: sp|Q9LIB3|BAG8_ARATH BAG family molecular chaperone regulator 8, chloroplastic; TrEMBL-Plants: tr|C6TD17|C6TD17_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0509600_LC LjG1.1_chr1 102853004 102856834 -
2 domain predictions
2 GO terms
LotjaGi1g1v0509700.1
n.a. Zinc finger protein; TAIR: AT5G61190.1 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|Q6PBT9|Z385B_DANRE Zinc finger protein 385B; TrEMBL-Plants: tr|V7B1Q0|V7B1Q0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0509700 LjG1.1_chr1 102858395 102862664 -
2 domain predictions
2 GO terms
LotjaGi1g1v0744200_LC.1
n.a. U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|A0A072U5H3|A0A072U5H3_MEDTR U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi1g1v0744200_LC LjG1.1_chr1 131771265 131774062 +
2 domain predictions
2 GO terms
LotjaGi1g1v0747900.1
n.a. Zinc finger matrin-type 2; TAIR: AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2; TrEMBL-Plants: tr|I3SLF9|I3SLF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0747900 LjG1.1_chr1 132053079 132056910 +
2 domain predictions
2 GO terms
LotjaGi3g1v0075400.1
n.a. Splicing factor 3A subunit 2; TAIR: AT2G32600.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2; TrEMBL-Plants: tr|I1MCD5|I1MCD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075400 LjG1.1_chr3 8269381 8273996 +
2 domain predictions
2 GO terms
LotjaGi3g1v0075400.2
n.a. Splicing factor 3A subunit 2; TAIR: AT2G32600.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2; TrEMBL-Plants: tr|A0A1J7GPB1|A0A1J7GPB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075400 LjG1.1_chr3 8269685 8273263 +
2 domain predictions
2 GO terms
LotjaGi3g1v0205100.1
n.a. Zinc finger protein; TAIR: AT5G61190.2 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|O59811|REI1_SCHPO Cytoplasmic 60S subunit biogenesis factor SPCC550.15c; TrEMBL-Plants: tr|V7AMM2|V7AMM2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0205100 LjG1.1_chr3 30096243 30103734 +
2 domain predictions
2 GO terms
LotjaGi3g1v0205100.2
n.a. Zinc finger protein; TAIR: AT5G61190.2 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|O59811|REI1_SCHPO Cytoplasmic 60S subunit biogenesis factor SPCC550.15c; TrEMBL-Plants: tr|V7AMM2|V7AMM2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0205100 LjG1.1_chr3 30096243 30103734 +
2 domain predictions
2 GO terms
LotjaGi4g1v0040600.1
n.a. HVA22-like protein; TAIR: AT1G74520.1 HVA22 homologue A; Swiss-Prot: sp|Q9S7V4|HA22A_ARATH HVA22-like protein a; TrEMBL-Plants: tr|A0A151T2F4|A0A151T2F4_CAJCA HVA22-like protein; Found in the gene: LotjaGi4g1v0040600 LjG1.1_chr4 4784375 4787619 +
2 domain predictions
2 GO terms
LotjaGi4g1v0040700.1
n.a. HVA22-like protein; TAIR: AT1G74520.1 HVA22 homologue A; Swiss-Prot: sp|Q9S7V4|HA22A_ARATH HVA22-like protein a; TrEMBL-Plants: tr|I1KQX1|I1KQX1_SOYBN HVA22-like protein; Found in the gene: LotjaGi4g1v0040700 LjG1.1_chr4 4800079 4811161 +
2 domain predictions
2 GO terms
LotjaGi4g1v0040700.2
n.a. HVA22-like protein; TAIR: AT1G69700.1 HVA22 homologue C; Swiss-Prot: sp|Q9S7V4|HA22A_ARATH HVA22-like protein a; TrEMBL-Plants: tr|A0A151T2F4|A0A151T2F4_CAJCA HVA22-like protein; Found in the gene: LotjaGi4g1v0040700 LjG1.1_chr4 4800079 4811161 +
2 domain predictions
2 GO terms
LotjaGi4g1v0040800.1
n.a. HVA22-like protein; TAIR: AT1G74520.1 HVA22 homologue A; Swiss-Prot: sp|Q9S7V4|HA22A_ARATH HVA22-like protein a; TrEMBL-Plants: tr|G7JV31|G7JV31_MEDTR TB2/DP1, HVA22 family protein; Found in the gene: LotjaGi4g1v0040800 LjG1.1_chr4 4812448 4817808 +
2 domain predictions
2 GO terms
LotjaGi4g1v0071400.1
n.a. U1 small nuclear ribonucleoprotein C; TAIR: AT1G49590.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q7XA66|ZOP1_ARATH Zinc finger protein ZOP1; TrEMBL-Plants: tr|I3S6A8|I3S6A8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0071400 LjG1.1_chr4 9058627 9063816 +
2 domain predictions
2 GO terms
LotjaGi4g1v0254500.1
n.a. Chaperone protein DnaJ; TAIR: AT1G74250.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|Q9C911|JJJ1_ARATH DNAJ protein JJJ1 homolog; TrEMBL-Plants: tr|A0A1J7HZV7|A0A1J7HZV7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0254500 LjG1.1_chr4 60865368 60868615 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.1
n.a. Zinc finger protein 385D; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66101348 66112453 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.2
n.a. Zinc finger protein 385D; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66101348 66112782 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.3
n.a. Zinc finger protein 385D; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66101376 66112934 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.4
n.a. Zinc finger protein 385D; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66101376 66112934 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.5
n.a. Zinc finger protein 385D; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66101376 66112934 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.6
n.a. Zinc finger protein 385D; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66101399 66112453 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288800_LC.7
n.a. 30S ribosomal protein S3; TAIR: AT2G19380.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|O64571|UBA1C_ARATH UBP1-associated proteins 1C; TrEMBL-Plants: tr|A0A1J7J0K1|A0A1J7J0K1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0288800_LC LjG1.1_chr4 66104524 66112720 -
2 domain predictions
2 GO terms
LotjaGi4g1v0288900.1
n.a. Zinc finger protein; TAIR: AT2G24030.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288900 LjG1.1_chr4 66113736 66117906 -
2 domain predictions
2 GO terms
LotjaGi4g1v0328300.1
n.a. Zinc finger RNA-binding protein; TAIR: AT2G19385.1 zinc ion binding protein; Swiss-Prot: sp|O64571|UBA1C_ARATH UBP1-associated proteins 1C; TrEMBL-Plants: tr|V7CCJ3|V7CCJ3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0328300 LjG1.1_chr4 70676292 70679451 +
2 domain predictions
2 GO terms
LotjaGi5g1v0065800.1
n.a. Zinc finger protein; TAIR: AT4G31420.1 Zinc finger protein 622; Swiss-Prot: sp|Q8H1G5|REIL1_ARATH Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1; TrEMBL-Plants: tr|I3SNF7|I3SNF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0065800 LjG1.1_chr5 10947992 10951436 +
2 domain predictions
2 GO terms
LotjaGi5g1v0082800.1
n.a. Zinc finger family protein; TAIR: AT2G36930.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|B0BLT0|ZN593_XENTR Zinc finger protein 593; TrEMBL-Plants: tr|I3T688|I3T688_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0082800 LjG1.1_chr5 13826596 13828846 +
2 domain predictions
2 GO terms
LotjaGi5g1v0261800.1
n.a. U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|I3S8F7|I3S8F7_LOTJA U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi5g1v0261800 LjG1.1_chr5 57046704 57050208 +
2 domain predictions
2 GO terms