Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v0586780.1

Overview

Field Value
Gene ID Lj5g3v0586780
Transcript ID Lj5g3v0586780.1
Lotus japonicus genome version MG20 v3.0
Description plasma membrane H+-ATPase [Eichhornia crassipes] gi|219816413|gb|ACL37322.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 15 15 – –
PANTHER
PTHR24093:SF361
1 121 121 4.50E-80 –
PANTHER
PTHR24093
1 121 121 4.50E-80 –
SUPERFAMILY
SSF81665
4 61 58 4.05E-09 –
Pfam
PF00122
11 57 47 2.40E-05
IPR008250
TMHMM
TMhelix
16 38 23 – –
Phobius
TRANSMEMBRANE
16 43 28 – –
Gene3D
G3DSA:1.20.1110.10
23 69 47 2.40E-10
IPR023298
Phobius
CYTOPLASMIC_DOMAIN
44 121 78 – –
SUPERFAMILY
SSF56784
54 84 31 5.03E-05
IPR023214
ProSitePatterns
PS00154
68 74 7 –
IPR018303
Gene3D
G3DSA:3.40.1110.10
70 111 42 3.90E-07
IPR023299

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v0586780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0586780.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.