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Lj5g3v0643860.1

Overview

Field Value
Gene ID Lj5g3v0643860
Transcript ID Lj5g3v0643860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: axoneme-associated protein mst101(2)-like [Cicer arietinum] gi|502122009|ref|XP_004497534.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 24 24 – –
PANTHER
PTHR22814
13 201 189 4.90E-106 –
PANTHER
PTHR22814:SF113
13 201 189 4.90E-106 –
SUPERFAMILY
SSF55008
29 83 55 5.11E-11
IPR006121
Gene3D
G3DSA:3.30.70.100
29 89 61 2.80E-14 –
Pfam
PF00403
33 83 51 3.50E-12
IPR006121
CDD
cd00371
34 88 55 4.46E-09
IPR006121
ProSiteProfiles
PS50846
34 67 34 9.407
IPR006121
MobiDBLite
mobidb-lite
84 138 55 – –
Gene3D
G3DSA:3.30.70.100
137 200 64 7.00E-14 –
SUPERFAMILY
SSF55008
139 195 57 5.63E-11
IPR006121
Pfam
PF00403
141 193 53 2.70E-12
IPR006121
CDD
cd00371
146 190 45 2.14E-05
IPR006121
MobiDBLite
mobidb-lite
201 233 33 – –
PANTHER
PTHR22814
247 342 96 4.90E-106 –
PANTHER
PTHR22814:SF113
247 342 96 4.90E-106 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v0643860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0643860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.