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Lj5g3v0712320.1

Overview

Field Value
Gene ID Lj5g3v0712320
Transcript ID Lj5g3v0712320.1
Lotus japonicus genome version MG20 v3.0
Description RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula] gi|124360677|gb|ABN08666.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 64 64 – –
Gene3D
G3DSA:3.30.70.330
41 149 109 8.20E-17
IPR012677
SUPERFAMILY
SSF54928
45 160 116 4.84E-18
IPR012677
ProSiteProfiles
PS50102
70 148 79 12.612
IPR000504
SMART
SM00360
71 144 74 5.80E-08
IPR000504
CDD
cd00590
72 144 73 9.37E-12 –
Pfam
PF00076
72 141 70 6.40E-08
IPR000504
Pfam
PF14111
300 347 48 2.10E-11
IPR025558
MobiDBLite
mobidb-lite
387 408 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0712320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0712320.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.