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Lj5g3v0803020.1

Overview

Field Value
Gene ID Lj5g3v0803020
Transcript ID Lj5g3v0803020.1
Lotus japonicus genome version MG20 v3.0
Description Protodermal factor 2 isoform 1 [Theobroma cacao] gi|508781368|gb|EOY28624.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 427 427 – –
PANTHER
PTHR24326:SF294
3 20 18 1.60E-102 –
PANTHER
PTHR24326
3 20 18 1.60E-102 –
PANTHER
PTHR24326
49 62 14 1.60E-102 –
Coils
Coil
49 76 28 – –
PANTHER
PTHR24326:SF294
49 62 14 1.60E-102 –
ProSiteProfiles
PS50848
128 358 231 39.55
IPR002913
SUPERFAMILY
SSF55961
130 356 227 5.91E-29 –
CDD
cd08875
135 353 219 1.74E-98 –
SMART
SM00234
137 355 219 5.40E-41
IPR002913
Pfam
PF01852
140 355 216 2.50E-42
IPR002913
Gene3D
G3DSA:3.30.530.20
252 354 103 9.80E-05
IPR023393
PANTHER
PTHR24326
331 612 282 1.60E-102 –
PANTHER
PTHR24326:SF294
331 612 282 1.60E-102 –
SUPERFAMILY
SSF55961
373 602 230 2.88E-12 –
Phobius
TRANSMEMBRANE
428 447 20 – –
Phobius
CYTOPLASMIC_DOMAIN
448 616 169 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj5g3v0803020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0803020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.