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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0816340 |
| Transcript ID | Lj5g3v0816340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcription factor E2FA-like [Cicer arietinum] gi|502122297|ref|XP_004497676.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 146 | 146 | – | – | |
| PANTHER | 12 | 461 | 450 | 2.90E-236 | ||
| PANTHER | 12 | 461 | 450 | 2.90E-236 | – | |
| Gene3D | 147 | 216 | 70 | 1.40E-28 | ||
| SUPERFAMILY | 148 | 212 | 65 | 3.72E-17 | ||
| SMART | 149 | 214 | 66 | 6.60E-34 | ||
| Pfam | 151 | 214 | 64 | 5.70E-24 | ||
| Coils | 165 | 185 | 21 | – | – | |
| SUPERFAMILY | 227 | 330 | 104 | 1.96E-32 | – | |
| Coils | 227 | 268 | 42 | – | – | |
| Pfam | 230 | 329 | 100 | 5.70E-34 | ||
| CDD | 230 | 329 | 100 | 1.17E-46 | ||
| MobiDBLite | 445 | 470 | 26 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of Lj5g3v0816340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0816340.1, powered by CORGI.
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