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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0941960 |
| Transcript ID | Lj5g3v0941960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cation/H(+) antiporter 15-like [Glycine max] gi|356527917|ref|XP_003532552.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 632 | 632 | 2.70E-274 | – | |
| PANTHER | 1 | 632 | 632 | 2.70E-274 | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| Pfam | 4 | 314 | 311 | 3.40E-31 | ||
| TMHMM | 15 | 34 | 20 | – | – | |
| Phobius | 16 | 35 | 20 | – | – | |
| Phobius | 36 | 54 | 19 | – | – | |
| TMHMM | 55 | 74 | 20 | – | – | |
| Phobius | 55 | 75 | 21 | – | – | |
| Phobius | 76 | 86 | 11 | – | – | |
| Phobius | 87 | 109 | 23 | – | – | |
| TMHMM | 89 | 111 | 23 | – | – | |
| Phobius | 110 | 114 | 5 | – | – | |
| Phobius | 115 | 135 | 21 | – | – | |
| TMHMM | 116 | 138 | 23 | – | – | |
| Phobius | 136 | 155 | 20 | – | – | |
| TMHMM | 153 | 170 | 18 | – | – | |
| Phobius | 156 | 184 | 29 | – | – | |
| TMHMM | 172 | 194 | 23 | – | – | |
| Phobius | 185 | 203 | 19 | – | – | |
| Phobius | 204 | 223 | 20 | – | – | |
| Phobius | 224 | 234 | 11 | – | – | |
| Phobius | 235 | 259 | 25 | – | – | |
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 260 | 264 | 5 | – | – | |
| TMHMM | 264 | 286 | 23 | – | – | |
| Phobius | 265 | 286 | 22 | – | – | |
| Phobius | 287 | 297 | 11 | – | – | |
| TMHMM | 296 | 318 | 23 | – | – | |
| Phobius | 298 | 318 | 21 | – | – | |
| Phobius | 319 | 635 | 317 | – | – | |
| Coils | 322 | 342 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj5g3v0941960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0941960.1, powered by CORGI.
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