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Lj5g3v1015820.1

Overview

Field Value
Gene ID Lj5g3v1015820
Transcript ID Lj5g3v1015820.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: signal recognition particle 9 kDa protein-like [Cicer arietinum] gi|502115145|ref|XP_004495135.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF017029
1 95 95 1.40E-40
IPR008832
PANTHER
PTHR12834:SF12
2 94 93 5.90E-53 –
PANTHER
PTHR12834
2 94 93 5.90E-53 –
Gene3D
G3DSA:3.30.720.10
2 83 82 6.40E-37
IPR009018
SUPERFAMILY
SSF54762
4 78 75 1.96E-31
IPR009018
Pfam
PF05486
5 66 62 1.00E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006614
Biological process SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
Subterm of
GO:0008312
Molecular function 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
Subterm of
GO:0045900
Biological process Negative regulation of translational elongation Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation.
Subterm of
Negatively regulates
GO:0048500
Cellular component Signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj5g3v1015820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1015820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.