Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0008312

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description 7S RNA binding
Full defintion Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
Subterm of

Relationships

The relationship of GO:0008312 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0008312, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
PMID
Signal recognition particle contains a 7S RNA essential for protein translocation across the endoplasmic reticulum.Walter P, Blobel G
Nature. 1982 Oct 21; 299 (5885): 691–8.PMID: 6181418

In addition to its previously characterized, six different polypeptide components, signal recognition protein--which functions in protein translocation across and integration into the endoplasmic reticulum membrane--contains a 7S RNA molecule. The RNA is closely identified with the small cytoplasmic 7SL RNA and is required for both structural and functional properties of signal recognition protein--which we therefore rename signal recognition particle.

Associated Lotus transcripts 37

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0111119.1
– PREDICTED: signal recognition particle 68 kDa protein-like isoform X1 [Cicer arietinum] gi|502139530|ref|XP_004503804.1|
GO terms
5
Lj0g3v0111119.3
– PREDICTED: signal recognition particle 68 kDa protein-like isoform X1 [Cicer arietinum] gi|502139530|ref|XP_004503804.1|
GO terms
5
Lj0g3v0310459.1
– PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Cicer arietinum] gi|502111902|ref|XP_004494200.1|
GO terms
3
Lj1g3v4717440.1
– Signal recognition particle 54 kDa protein [Medicago truncatula] gi|357511109|ref|XP_003625843.1|
GO terms
3
Lj1g3v4717440.2
– Signal recognition particle 54 kDa protein [Medicago truncatula] gi|357511109|ref|XP_003625843.1|
GO terms
3
Lj3g3v0044270.1
– Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi|508778637|gb|EOY25893.1|
GO terms
5
Lj3g3v2185880.1
– PREDICTED: signal recognition particle 54 kDa protein 2-like [Cicer arietinum] gi|502147886|ref|XP_004506954.1|
GO terms
3
Lj4g3v0510210.1
– Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi|508778637|gb|EOY25893.1|
GO terms
5
Lj4g3v2513900.1
– PREDICTED: signal recognition particle 72 kDa protein-like [Glycine max] gi|356525126|ref|XP_003531178.1|
GO terms
3
Lj4g3v2871930.1
– PREDICTED: signal recognition particle 68 kDa protein-like isoform X1 [Cicer arietinum] gi|502139530|ref|XP_004503804.1|
GO terms
5
Lj4g3v2871930.2
– PREDICTED: signal recognition particle 68 kDa protein-like isoform X1 [Cicer arietinum] gi|502139530|ref|XP_004503804.1|
GO terms
5
Lj5g3v1015820.1
– PREDICTED: signal recognition particle 9 kDa protein-like [Cicer arietinum] gi|502115145|ref|XP_004495135.1|
GO terms
4
LotjaGi1g1v0674900_LC.1
– Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|G7KQW9|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC
GO terms
3
LotjaGi1g1v0674900_LC.2
– Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|G7KQW9|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC
GO terms
3
LotjaGi1g1v0674900_LC.3
– Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|G7KQW9|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC
GO terms
3
LotjaGi1g1v0674900_LC.4
– Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|G7KQW9|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC
GO terms
3
LotjaGi1g1v0674900_LC.5
– Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|G7KQW9|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC
GO terms
3
LotjaGi1g1v0675200.1
– Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr|A0A0B2P3G8|A0A0B2P3G8_GLYSO Signal recognition particle 54 kDa protein, chloroplastic; Found in the gene: LotjaGi1g1v0675200
GO terms
3
LotjaGi2g1v0434000.1
– Signal recognition particle 14 kDa protein; TAIR: AT2G43640.1 Signal recognition particle, SRP9/SRP14 subunit; Swiss-Prot: sp|O04421|SRP14_ARATH Signal recognition particle 14 kDa protein; TrEMBL-Plants: tr|I3SA11|I3SA11_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0434000
GO terms
5
LotjaGi3g1v0007800.1
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0007800.2
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0007800.3
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0007800.4
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0007800.5
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0007800.6
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0007800.7
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800
GO terms
5
LotjaGi3g1v0355000.1
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A0D2UQY3|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000
GO terms
5
LotjaGi3g1v0355000.2
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|I1KVG2|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000
GO terms
5
LotjaGi3g1v0355000.3
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|I1KVG2|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000
GO terms
5
LotjaGi3g1v0355000.4
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A0D2UQY3|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000
GO terms
5
LotjaGi4g1v0068100.1
– Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi4g1v0068100
GO terms
5
LotjaGi4g1v0312400.1
– Signal recognition particle 19 kDa protein; TAIR: AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19; Swiss-Prot: sp|P49964|SRP19_ORYSJ Signal recognition particle 19 kDa protein; TrEMBL-Plants: tr|A0A151TE04|A0A151TE04_CAJCA Signal recognition particle 19 kDa protein; Found in the gene: LotjaGi4g1v0312400
GO terms
3
LotjaGi4g1v0363300.1
– Signal recognition particle subunit SRP72; TAIR: AT1G67680.1 SRP72 RNA-binding domain-containing protein; Swiss-Prot: sp|O76094|SRP72_HUMAN Signal recognition particle subunit SRP72; TrEMBL-Plants: tr|A0A0S3R174|A0A0S3R174_PHAAN Signal recognition particle subunit SRP72; Found in the gene: LotjaGi4g1v0363300
GO terms
3
LotjaGi4g1v0421900.1
– Signal recognition particle subunit SRP68; TAIR: AT5G61970.1 signal recognition particle-related / SRP-like protein; Swiss-Prot: sp|Q8BMA6|SRP68_MOUSE Signal recognition particle subunit SRP68; TrEMBL-Plants: tr|G7LIT8|G7LIT8_MEDTR Signal recognition particle subunit SRP68; Found in the gene: LotjaGi4g1v0421900
GO terms
5
LotjaGi4g1v0421900.2
– Signal recognition particle subunit SRP68; TAIR: AT5G61970.1 signal recognition particle-related / SRP-like protein; Swiss-Prot: sp|Q8BMA6|SRP68_MOUSE Signal recognition particle subunit SRP68; TrEMBL-Plants: tr|G7LIT8|G7LIT8_MEDTR Signal recognition particle subunit SRP68; Found in the gene: LotjaGi4g1v0421900
GO terms
5
LotjaGi4g1v0421900.3
– Signal recognition particle subunit SRP68; TAIR: AT5G61970.1 signal recognition particle-related / SRP-like protein; Swiss-Prot: sp|Q8BMA6|SRP68_MOUSE Signal recognition particle subunit SRP68; TrEMBL-Plants: tr|G7LIT8|G7LIT8_MEDTR Signal recognition particle subunit SRP68; Found in the gene: LotjaGi4g1v0421900
GO terms
5
LotjaGi5g1v0175900.1
– Signal recognition particle 9 kDa protein; TAIR: AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit; Swiss-Prot: sp|Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa protein; TrEMBL-Plants: tr|I3S8S5|I3S8S5_LOTJA Signal recognition particle 9 kDa protein; Found in the gene: LotjaGi5g1v0175900
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0048500
Cellular component Signal recognition particle 1 2.70