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Lj5g3v1211590.1

Overview

Field Value
Gene ID Lj5g3v1211590
Transcript ID Lj5g3v1211590.1
Lotus japonicus genome version MG20 v3.0
Description Chaperone protein dnaJ [Medicago truncatula] gi|357498605|ref|XP_003619591.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24078
10 203 194 1.10E-83 –
PANTHER
PTHR24078:SF208
10 203 194 1.10E-83 –
SUPERFAMILY
SSF46565
59 129 71 8.64E-19
IPR001623
Gene3D
G3DSA:1.10.287.110
61 135 75 2.30E-19
IPR001623
SMART
SM00271
65 122 58 3.50E-19
IPR001623
CDD
cd06257
66 119 54 5.31E-16
IPR001623
Pfam
PF00226
66 127 62 4.50E-19
IPR001623
ProSiteProfiles
PS50076
66 130 65 16.021
IPR001623
PRINTS
PR00625
68 86 19 1.90E-12
IPR001623
PRINTS
PR00625
86 101 16 1.90E-12
IPR001623
PRINTS
PR00625
102 122 21 1.90E-12
IPR001623
ProSitePatterns
PS00636
107 126 20 –
IPR018253
PANTHER
PTHR24078:SF208
221 342 122 1.10E-83 –
Coils
Coil
221 241 21 – –
PANTHER
PTHR24078
221 342 122 1.10E-83 –
MobiDBLite
mobidb-lite
258 281 24 – –
Coils
Coil
278 298 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v1211590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1211590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.