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Lj5g3v1473500.2

Overview

Field	Value
Gene ID	Lj5g3v1473500
Transcript ID	Lj5g3v1473500.2
Related isoforms 1	Lj5g3v1473500.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: root phototropism protein 3-like [Glycine max] gi\|356574935\|ref\|XP_003555598.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32370 View details on PTHR32370 Search for proteins/transripts with this domain View external data on PTHR32370	21	144	124	2.60E-68	–
PANTHER	PTHR32370:SF31 View details on PTHR32370:SF31 Search for proteins/transripts with this domain View external data on PTHR32370:SF31	21	144	124	2.60E-68	–
Gene3D	G3DSA:3.30.710.10 View details on G3DSA:3.30.710.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.710.10	45	143	99	4.60E-16	–
SUPERFAMILY	SSF54695 View details on SSF54695 Search for proteins/transripts with this domain View external data on SSF54695	45	143	99	2.83E-16	IPR011333 Show description in modal box View details on IPR011333 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00651 View details on PF00651 Search for proteins/transripts with this domain View external data on PF00651	52	143	92	2.30E-12	IPR000210 Show description in modal box View details on IPR000210 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00225 View details on SM00225 Search for proteins/transripts with this domain View external data on SM00225	55	144	90	0.0018	IPR000210 Show description in modal box View details on IPR000210 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50097 View details on PS50097 Search for proteins/transripts with this domain View external data on PS50097	55	128	74	12.909	IPR000210 Show description in modal box View details on IPR000210 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj5g3v1473500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1473500.2, powered by CORGI.

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