Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1514640.1

Overview

Field Value
Gene ID Lj5g3v1514640
Transcript ID Lj5g3v1514640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GTP-binding protein SAR1A-like [Cicer arietinum] gi|502113098|ref|XP_004494541.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11711:SF194
1 193 193 9.30E-163 –
PANTHER
PTHR11711
1 193 193 9.30E-163 –
CDD
cd00879
2 192 191 8.63E-130 –
SMART
SM00178
4 192 189 2.00E-129 –
SMART
SM00177
4 193 190 7.90E-17 –
Pfam
PF00025
8 192 185 4.40E-65
IPR006689
ProSiteProfiles
PS51422
14 192 179 29.774
IPR006687
Gene3D
G3DSA:3.40.50.300
15 193 179 2.20E-49
IPR027417
SUPERFAMILY
SSF52540
17 192 176 9.74E-43
IPR027417
TIGRFAM
TIGR00231
19 137 119 3.20E-15
IPR005225
PRINTS
PR00328
22 45 24 2.60E-74
IPR006689
PRINTS
PR00328
50 74 25 2.60E-74
IPR006689
PRINTS
PR00328
77 102 26 2.60E-74
IPR006689
PRINTS
PR00328
122 143 22 2.60E-74
IPR006689
PRINTS
PR00328
166 190 25 2.60E-74
IPR006689

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1514640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1514640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.