Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1530120.1

Overview

Field Value
Gene ID Lj5g3v1530120
Transcript ID Lj5g3v1530120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: auxin-induced protein 5NG4-like [Glycine max] gi|356575317|ref|XP_003555788.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 131 131 2.80E-68
Phobius 1 17 17
Phobius 1 1 1
PANTHER 1 131 131 2.80E-68
Pfam 2 101 100 3.00E-14
Phobius 2 12 11
Phobius 13 17 5
Phobius 18 32 15
SUPERFAMILY 20 108 89 7.98E-13
TMHMM 29 51 23
Phobius 33 51 19
Phobius 52 57 6
Phobius 58 78 21
TMHMM 58 80 23
Phobius 79 83 5
Phobius 84 105 22
TMHMM 85 104 20
Phobius 106 143 38

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj5g3v1530120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1530120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.